miRNA display CGI


Results 1 - 20 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23310 5' -54.3 NC_005259.1 + 52151 0.66 0.84478
Target:  5'- cGCCGAGG-CAGgCagc--GCCGAGGCg -3'
miRNA:   3'- -CGGCUCUaGUUgGgcaacCGGUUCCG- -5'
23310 5' -54.3 NC_005259.1 + 26440 0.66 0.84478
Target:  5'- cGCCGAGcgggCGGgCCGgugGGCCGAuGUg -3'
miRNA:   3'- -CGGCUCua--GUUgGGCaa-CCGGUUcCG- -5'
23310 5' -54.3 NC_005259.1 + 23195 0.66 0.84478
Target:  5'- -aCGAGAUCGugUuCGUgUGGCcCAAGGa -3'
miRNA:   3'- cgGCUCUAGUugG-GCA-ACCG-GUUCCg -5'
23310 5' -54.3 NC_005259.1 + 50405 0.66 0.84478
Target:  5'- cGCCGAGcgC-GCCgGUgccuugaccGGCUcGGGCa -3'
miRNA:   3'- -CGGCUCuaGuUGGgCAa--------CCGGuUCCG- -5'
23310 5' -54.3 NC_005259.1 + 45605 0.66 0.836129
Target:  5'- aCCGAcagcucGGUCucgauGCCCGccgGGCC-GGGCa -3'
miRNA:   3'- cGGCU------CUAGu----UGGGCaa-CCGGuUCCG- -5'
23310 5' -54.3 NC_005259.1 + 30659 0.66 0.836129
Target:  5'- aGCCGcAGcacAUC-GCCCGgcgaguagcUGGCCAccugAGGCa -3'
miRNA:   3'- -CGGC-UC---UAGuUGGGCa--------ACCGGU----UCCG- -5'
23310 5' -54.3 NC_005259.1 + 32628 0.66 0.82727
Target:  5'- aUCGAGcUCucgguACgCCGcaUUGGCCGGGGUg -3'
miRNA:   3'- cGGCUCuAGu----UG-GGC--AACCGGUUCCG- -5'
23310 5' -54.3 NC_005259.1 + 67729 0.66 0.82727
Target:  5'- aGCCucGAUCcgauaCCGgcGGCCAcuAGGCc -3'
miRNA:   3'- -CGGcuCUAGuug--GGCaaCCGGU--UCCG- -5'
23310 5' -54.3 NC_005259.1 + 37225 0.66 0.826373
Target:  5'- cGCCGGGG-CGcugGCCCGUgccggauUGGCUGccgccguugccAGGCu -3'
miRNA:   3'- -CGGCUCUaGU---UGGGCA-------ACCGGU-----------UCCG- -5'
23310 5' -54.3 NC_005259.1 + 57650 0.66 0.820949
Target:  5'- cGCCGGGuacagcagcacGUCGACCgUGUccggccaaucgaccgUGGCCAgguugccGGGCu -3'
miRNA:   3'- -CGGCUC-----------UAGUUGG-GCA---------------ACCGGU-------UCCG- -5'
23310 5' -54.3 NC_005259.1 + 5894 0.66 0.81821
Target:  5'- uGCCG---UCGACCaCGUcgaGGUCGAGGUg -3'
miRNA:   3'- -CGGCucuAGUUGG-GCAa--CCGGUUCCG- -5'
23310 5' -54.3 NC_005259.1 + 65090 0.66 0.81821
Target:  5'- aGUCGAGcUCGGCUCGUggcacGGUCAGuGCg -3'
miRNA:   3'- -CGGCUCuAGUUGGGCAa----CCGGUUcCG- -5'
23310 5' -54.3 NC_005259.1 + 6433 0.66 0.81821
Target:  5'- cGCCGAuGUCGGCaCCGUcGcGCUGAucGGCa -3'
miRNA:   3'- -CGGCUcUAGUUG-GGCAaC-CGGUU--CCG- -5'
23310 5' -54.3 NC_005259.1 + 52372 0.66 0.81821
Target:  5'- cGCCGAcucaagcggcuGcgCAGCCUGccucgGGCCAucgagguguGGGCg -3'
miRNA:   3'- -CGGCU-----------CuaGUUGGGCaa---CCGGU---------UCCG- -5'
23310 5' -54.3 NC_005259.1 + 29919 0.66 0.81821
Target:  5'- cCCGAGAccaUCGACgCG-UGGCCGccacgcGGCc -3'
miRNA:   3'- cGGCUCU---AGUUGgGCaACCGGUu-----CCG- -5'
23310 5' -54.3 NC_005259.1 + 58548 0.66 0.80896
Target:  5'- cGUCGAGGUUAcgGCUCGggcgguugGGCCGGaucgcGGCg -3'
miRNA:   3'- -CGGCUCUAGU--UGGGCaa------CCGGUU-----CCG- -5'
23310 5' -54.3 NC_005259.1 + 24666 0.67 0.799529
Target:  5'- -aCGAGcgCGACCCGUUcGCCAuccucGuGCa -3'
miRNA:   3'- cgGCUCuaGUUGGGCAAcCGGUu----C-CG- -5'
23310 5' -54.3 NC_005259.1 + 65756 0.67 0.799529
Target:  5'- cGCCGAGuagugguACCCGUacagaucgcagUGcGCCAuGGCc -3'
miRNA:   3'- -CGGCUCuagu---UGGGCA-----------AC-CGGUuCCG- -5'
23310 5' -54.3 NC_005259.1 + 38554 0.67 0.799529
Target:  5'- uGCCGAGuuccacgcCAGCacaCCGUUGGUCAGGa- -3'
miRNA:   3'- -CGGCUCua------GUUG---GGCAACCGGUUCcg -5'
23310 5' -54.3 NC_005259.1 + 52596 0.67 0.789927
Target:  5'- cGCCGAGcacCAGCgCCGUacggUGGCCAAc-- -3'
miRNA:   3'- -CGGCUCua-GUUG-GGCA----ACCGGUUccg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.