miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23310 5' -54.3 NC_005259.1 + 30834 0.67 0.789927
Target:  5'- cGCCGAGGUCGgcaACCUGcaccUCAAGGUa -3'
miRNA:   3'- -CGGCUCUAGU---UGGGCaaccGGUUCCG- -5'
23310 5' -54.3 NC_005259.1 + 22558 0.67 0.789927
Target:  5'- cGCCGAGGUCAuggaagccGCCaccgaGUacgUGGUCGAcGCg -3'
miRNA:   3'- -CGGCUCUAGU--------UGGg----CA---ACCGGUUcCG- -5'
23310 5' -54.3 NC_005259.1 + 17354 0.67 0.789927
Target:  5'- cGUCGAGGUCGgcgGCUCGgcgcUGGUCGuGGUc -3'
miRNA:   3'- -CGGCUCUAGU---UGGGCa---ACCGGUuCCG- -5'
23310 5' -54.3 NC_005259.1 + 65148 0.67 0.789927
Target:  5'- cCCGAcaaGUCGaaacgggccaugGCCCGccgGGUCAAGGCg -3'
miRNA:   3'- cGGCUc--UAGU------------UGGGCaa-CCGGUUCCG- -5'
23310 5' -54.3 NC_005259.1 + 6630 0.67 0.789927
Target:  5'- uGCCagcGGGUCcGCCCGUgacgacacGGUCGAGGg -3'
miRNA:   3'- -CGGc--UCUAGuUGGGCAa-------CCGGUUCCg -5'
23310 5' -54.3 NC_005259.1 + 5061 0.67 0.788958
Target:  5'- gGUCGAGAUCGuggGCCgGgucgacgGGCCGGugucaccGGCg -3'
miRNA:   3'- -CGGCUCUAGU---UGGgCaa-----CCGGUU-------CCG- -5'
23310 5' -54.3 NC_005259.1 + 3053 0.67 0.787987
Target:  5'- cGCCGAcuacua-CCGUcgacgGGCCGAGGCc -3'
miRNA:   3'- -CGGCUcuaguugGGCAa----CCGGUUCCG- -5'
23310 5' -54.3 NC_005259.1 + 17827 0.67 0.780165
Target:  5'- -gCGAGGccaUCGACggGUgGGCCGAGGCc -3'
miRNA:   3'- cgGCUCU---AGUUGggCAaCCGGUUCCG- -5'
23310 5' -54.3 NC_005259.1 + 46629 0.67 0.780165
Target:  5'- gGCCuGAcuGGUCAGCUCcaUGGCCAcacGGCu -3'
miRNA:   3'- -CGG-CU--CUAGUUGGGcaACCGGUu--CCG- -5'
23310 5' -54.3 NC_005259.1 + 24699 0.67 0.770254
Target:  5'- uGCCGAgcGAUCAcCCCGagaaaGCCucGGCg -3'
miRNA:   3'- -CGGCU--CUAGUuGGGCaac--CGGuuCCG- -5'
23310 5' -54.3 NC_005259.1 + 45184 0.67 0.770254
Target:  5'- cGCCGAGGUCAGCgCGgugaugacGGgCGAGuucGCg -3'
miRNA:   3'- -CGGCUCUAGUUGgGCaa------CCgGUUC---CG- -5'
23310 5' -54.3 NC_005259.1 + 19689 0.67 0.770254
Target:  5'- gGUCGGGAUCGAgCaggcucgcaCGUUGGCUgccgccGAGGUg -3'
miRNA:   3'- -CGGCUCUAGUUgG---------GCAACCGG------UUCCG- -5'
23310 5' -54.3 NC_005259.1 + 11335 0.67 0.770254
Target:  5'- cGUCGucGGUCAugCCGUUGaGCCc-GGUc -3'
miRNA:   3'- -CGGCu-CUAGUugGGCAAC-CGGuuCCG- -5'
23310 5' -54.3 NC_005259.1 + 2182 0.67 0.760203
Target:  5'- uGCCGAGGUCAugGgCCGcuacGG-CAAGGUg -3'
miRNA:   3'- -CGGCUCUAGU--UgGGCaa--CCgGUUCCG- -5'
23310 5' -54.3 NC_005259.1 + 50235 0.67 0.760203
Target:  5'- uCCGAGcgCGGgCgCGgaucgUGGCCAacGGGCu -3'
miRNA:   3'- cGGCUCuaGUUgG-GCa----ACCGGU--UCCG- -5'
23310 5' -54.3 NC_005259.1 + 46951 0.67 0.757163
Target:  5'- cGCCGAccgcguUgAGCuuGUUGGCCAcgccgccgaugaucGGGCc -3'
miRNA:   3'- -CGGCUcu----AgUUGggCAACCGGU--------------UCCG- -5'
23310 5' -54.3 NC_005259.1 + 54699 0.67 0.754111
Target:  5'- uGUCGAGGcggguggccUCAGCCUGguacaggacauaGCCGAGGCu -3'
miRNA:   3'- -CGGCUCU---------AGUUGGGCaac---------CGGUUCCG- -5'
23310 5' -54.3 NC_005259.1 + 47041 0.67 0.750025
Target:  5'- gGCCgGGGAUCugcgcgAGCgUGUUGGUgagCGAGGCg -3'
miRNA:   3'- -CGG-CUCUAG------UUGgGCAACCG---GUUCCG- -5'
23310 5' -54.3 NC_005259.1 + 51105 0.67 0.746948
Target:  5'- gGgCGGGAUCugUCCGgcaGGCCAucagaucaccgucgGGGCg -3'
miRNA:   3'- -CgGCUCUAGuuGGGCaa-CCGGU--------------UCCG- -5'
23310 5' -54.3 NC_005259.1 + 9063 0.68 0.73662
Target:  5'- gGCuCGGuGGUCAuggccacagcauagGCCCGUUGcccGCCGAGGg -3'
miRNA:   3'- -CG-GCU-CUAGU--------------UGGGCAAC---CGGUUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.