miRNA display CGI


Results 21 - 40 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23311 5' -54.5 NC_005259.1 + 19694 0.66 0.780082
Target:  5'- gGAuCGAGCAGGCucgcacGUUgGCuGCCGCCGAg -3'
miRNA:   3'- -CU-GCUCGUUCGc-----UAGaUG-UGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 63355 0.66 0.780082
Target:  5'- uGACGGGCuugauGUGAagCUGCACguccucguCGCCGAu -3'
miRNA:   3'- -CUGCUCGuu---CGCUa-GAUGUG--------GCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 66935 0.67 0.770126
Target:  5'- cGACcgGGGUGAGCGGg--ACACCGgCGAg -3'
miRNA:   3'- -CUG--CUCGUUCGCUagaUGUGGCgGCU- -5'
23311 5' -54.5 NC_005259.1 + 61734 0.67 0.769123
Target:  5'- -uCGAGCAGGUgugcguccggcgaGAUCUGugcggcggcaauCACCGCCGc -3'
miRNA:   3'- cuGCUCGUUCG-------------CUAGAU------------GUGGCGGCu -5'
23311 5' -54.5 NC_005259.1 + 26409 0.67 0.764085
Target:  5'- -cCGGGCGcGGCGGUgccgccguagaacGCACCGCCGAg -3'
miRNA:   3'- cuGCUCGU-UCGCUAga-----------UGUGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 31180 0.67 0.749806
Target:  5'- -uUGAGCcagucGGCGAgg-AUGCCGCCGAa -3'
miRNA:   3'- cuGCUCGu----UCGCUagaUGUGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 43235 0.67 0.729015
Target:  5'- uGAUGAGCGAGCuGAcg-AUGCCGCCc- -3'
miRNA:   3'- -CUGCUCGUUCG-CUagaUGUGGCGGcu -5'
23311 5' -54.5 NC_005259.1 + 58769 0.67 0.729015
Target:  5'- cGACGcuGCGGGCGcUgUGCGCCgGUCGAg -3'
miRNA:   3'- -CUGCu-CGUUCGCuAgAUGUGG-CGGCU- -5'
23311 5' -54.5 NC_005259.1 + 4663 0.67 0.727965
Target:  5'- uACGGGCAcGGUG-UCUGCACUggcucggGCCGAc -3'
miRNA:   3'- cUGCUCGU-UCGCuAGAUGUGG-------CGGCU- -5'
23311 5' -54.5 NC_005259.1 + 32584 0.68 0.718471
Target:  5'- -uUGGGC-AGCGGUUUACGCgcgugcaggaCGCCGAc -3'
miRNA:   3'- cuGCUCGuUCGCUAGAUGUG----------GCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 5082 0.68 0.718471
Target:  5'- cGACGGGCcggugucaccGGCGAUCUGCguagACCGCg-- -3'
miRNA:   3'- -CUGCUCGu---------UCGCUAGAUG----UGGCGgcu -5'
23311 5' -54.5 NC_005259.1 + 27058 0.68 0.718471
Target:  5'- -cUGAGCGA-CGGUCacggcgACAUCGCCGAc -3'
miRNA:   3'- cuGCUCGUUcGCUAGa-----UGUGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 34471 0.68 0.718471
Target:  5'- uGAUGAGCAgcuuGGUGGUgUcCcCCGCCGAc -3'
miRNA:   3'- -CUGCUCGU----UCGCUAgAuGuGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 26109 0.68 0.717412
Target:  5'- -cCGAGCAgaccgccgccgccGGUcgccGGUCcgACGCCGCCGAg -3'
miRNA:   3'- cuGCUCGU-------------UCG----CUAGa-UGUGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 36400 0.68 0.70464
Target:  5'- cGCGAGCGacuugAGCGccucaagggucaugGUCUGCGCagcguCGCCGAg -3'
miRNA:   3'- cUGCUCGU-----UCGC--------------UAGAUGUG-----GCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 42749 0.68 0.703571
Target:  5'- -uUGAGCAGGCGGuucucgaUCUGCucggcggucucgggGCCGCCa- -3'
miRNA:   3'- cuGCUCGUUCGCU-------AGAUG--------------UGGCGGcu -5'
23311 5' -54.5 NC_005259.1 + 40126 0.68 0.697142
Target:  5'- cGugGAauugGCGGGCGAgCU-CGCCGUCGGu -3'
miRNA:   3'- -CugCU----CGUUCGCUaGAuGUGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 23657 0.68 0.697142
Target:  5'- cGACG-GCGA-CGG-CUGgACCGCCGAc -3'
miRNA:   3'- -CUGCuCGUUcGCUaGAUgUGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 1817 0.68 0.697142
Target:  5'- cGCGAGCAAucccGcCGAcCUGCucgccgcuGCCGCCGAg -3'
miRNA:   3'- cUGCUCGUU----C-GCUaGAUG--------UGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 62855 0.68 0.697142
Target:  5'- uGACGAGCAGccgcucggcGCGAggUAgGCCGCuCGGu -3'
miRNA:   3'- -CUGCUCGUU---------CGCUagAUgUGGCG-GCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.