miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23312 3' -50 NC_005259.1 + 52832 0.66 0.9774
Target:  5'- --aGGGCAuccUCGACAcGgaccCCGAgCUGCCc -3'
miRNA:   3'- guaCCUGU---AGCUGU-Ca---GGCUaGAUGG- -5'
23312 3' -50 NC_005259.1 + 41632 0.66 0.968594
Target:  5'- cCAUGG----UGGCGGUgCCGGUCUGCg -3'
miRNA:   3'- -GUACCuguaGCUGUCA-GGCUAGAUGg -5'
23312 3' -50 NC_005259.1 + 19469 0.66 0.968594
Target:  5'- cCGUGcGCAUcCGuCAGUUcgucaaCGAUCUGCCg -3'
miRNA:   3'- -GUACcUGUA-GCuGUCAG------GCUAGAUGG- -5'
23312 3' -50 NC_005259.1 + 31210 0.66 0.965179
Target:  5'- aUcgGGAugcCGUUGAuCAGUCCGAUgagACCa -3'
miRNA:   3'- -GuaCCU---GUAGCU-GUCAGGCUAga-UGG- -5'
23312 3' -50 NC_005259.1 + 59656 0.66 0.965179
Target:  5'- -uUGGACAuuucUCGGguCAGUCaGAUCaUGCCu -3'
miRNA:   3'- guACCUGU----AGCU--GUCAGgCUAG-AUGG- -5'
23312 3' -50 NC_005259.1 + 54607 0.66 0.965179
Target:  5'- -cUGGuCAUUcuCGGUgCUGAUCUGCCg -3'
miRNA:   3'- guACCuGUAGcuGUCA-GGCUAGAUGG- -5'
23312 3' -50 NC_005259.1 + 20409 0.67 0.957585
Target:  5'- --aGGGCAUCGA-GGUcuacCCGGUC-ACCg -3'
miRNA:   3'- guaCCUGUAGCUgUCA----GGCUAGaUGG- -5'
23312 3' -50 NC_005259.1 + 30111 0.67 0.953393
Target:  5'- uGUGuGCAUCGGCAuugccGUCCGG-CUGCg -3'
miRNA:   3'- gUACcUGUAGCUGU-----CAGGCUaGAUGg -5'
23312 3' -50 NC_005259.1 + 43919 0.67 0.944192
Target:  5'- gAUGGGCAgCGACGacaCCGcgCUACUg -3'
miRNA:   3'- gUACCUGUaGCUGUca-GGCuaGAUGG- -5'
23312 3' -50 NC_005259.1 + 14846 0.68 0.933879
Target:  5'- uCGUGGACAcggucgugcUCGcgaGGUUCGcgCUGCCc -3'
miRNA:   3'- -GUACCUGU---------AGCug-UCAGGCuaGAUGG- -5'
23312 3' -50 NC_005259.1 + 3586 0.68 0.933334
Target:  5'- --aGGACAUCGACAccgcacuGUCCauccugcgGGcCUACCg -3'
miRNA:   3'- guaCCUGUAGCUGU-------CAGG--------CUaGAUGG- -5'
23312 3' -50 NC_005259.1 + 17830 0.68 0.916291
Target:  5'- --aGGcCAUCGACGGgugggCCGAg--GCCa -3'
miRNA:   3'- guaCCuGUAGCUGUCa----GGCUagaUGG- -5'
23312 3' -50 NC_005259.1 + 17440 0.69 0.909864
Target:  5'- --aGGACAUUGGCAuugaCGAUgUGCCa -3'
miRNA:   3'- guaCCUGUAGCUGUcag-GCUAgAUGG- -5'
23312 3' -50 NC_005259.1 + 51170 0.71 0.806639
Target:  5'- cCGUGG-CGagccacagaucgaucUCaGGCAGUCCGGUCUuACCg -3'
miRNA:   3'- -GUACCuGU---------------AG-CUGUCAGGCUAGA-UGG- -5'
23312 3' -50 NC_005259.1 + 1654 0.72 0.751204
Target:  5'- gGUGGAC--CGAUaucagcacggucaGGUCCGAUCUGCg -3'
miRNA:   3'- gUACCUGuaGCUG-------------UCAGGCUAGAUGg -5'
23312 3' -50 NC_005259.1 + 5069 0.73 0.709508
Target:  5'- uCGUGGGCcggGUCGACGGgCCGGUgUcACCg -3'
miRNA:   3'- -GUACCUG---UAGCUGUCaGGCUAgA-UGG- -5'
23312 3' -50 NC_005259.1 + 2700 0.75 0.619899
Target:  5'- --aGGACAagGACGGUuucaccgCCGAUCUGCUc -3'
miRNA:   3'- guaCCUGUagCUGUCA-------GGCUAGAUGG- -5'
23312 3' -50 NC_005259.1 + 15019 1.13 0.002643
Target:  5'- gCAUGGACAUCGACAGUCCGAUCUACCg -3'
miRNA:   3'- -GUACCUGUAGCUGUCAGGCUAGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.