Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23312 | 3' | -50 | NC_005259.1 | + | 1654 | 0.72 | 0.751204 |
Target: 5'- gGUGGAC--CGAUaucagcacggucaGGUCCGAUCUGCg -3' miRNA: 3'- gUACCUGuaGCUG-------------UCAGGCUAGAUGg -5' |
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23312 | 3' | -50 | NC_005259.1 | + | 2700 | 0.75 | 0.619899 |
Target: 5'- --aGGACAagGACGGUuucaccgCCGAUCUGCUc -3' miRNA: 3'- guaCCUGUagCUGUCA-------GGCUAGAUGG- -5' |
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23312 | 3' | -50 | NC_005259.1 | + | 3586 | 0.68 | 0.933334 |
Target: 5'- --aGGACAUCGACAccgcacuGUCCauccugcgGGcCUACCg -3' miRNA: 3'- guaCCUGUAGCUGU-------CAGG--------CUaGAUGG- -5' |
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23312 | 3' | -50 | NC_005259.1 | + | 5069 | 0.73 | 0.709508 |
Target: 5'- uCGUGGGCcggGUCGACGGgCCGGUgUcACCg -3' miRNA: 3'- -GUACCUG---UAGCUGUCaGGCUAgA-UGG- -5' |
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23312 | 3' | -50 | NC_005259.1 | + | 14846 | 0.68 | 0.933879 |
Target: 5'- uCGUGGACAcggucgugcUCGcgaGGUUCGcgCUGCCc -3' miRNA: 3'- -GUACCUGU---------AGCug-UCAGGCuaGAUGG- -5' |
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23312 | 3' | -50 | NC_005259.1 | + | 15019 | 1.13 | 0.002643 |
Target: 5'- gCAUGGACAUCGACAGUCCGAUCUACCg -3' miRNA: 3'- -GUACCUGUAGCUGUCAGGCUAGAUGG- -5' |
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23312 | 3' | -50 | NC_005259.1 | + | 17440 | 0.69 | 0.909864 |
Target: 5'- --aGGACAUUGGCAuugaCGAUgUGCCa -3' miRNA: 3'- guaCCUGUAGCUGUcag-GCUAgAUGG- -5' |
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23312 | 3' | -50 | NC_005259.1 | + | 17830 | 0.68 | 0.916291 |
Target: 5'- --aGGcCAUCGACGGgugggCCGAg--GCCa -3' miRNA: 3'- guaCCuGUAGCUGUCa----GGCUagaUGG- -5' |
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23312 | 3' | -50 | NC_005259.1 | + | 19469 | 0.66 | 0.968594 |
Target: 5'- cCGUGcGCAUcCGuCAGUUcgucaaCGAUCUGCCg -3' miRNA: 3'- -GUACcUGUA-GCuGUCAG------GCUAGAUGG- -5' |
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23312 | 3' | -50 | NC_005259.1 | + | 20409 | 0.67 | 0.957585 |
Target: 5'- --aGGGCAUCGA-GGUcuacCCGGUC-ACCg -3' miRNA: 3'- guaCCUGUAGCUgUCA----GGCUAGaUGG- -5' |
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23312 | 3' | -50 | NC_005259.1 | + | 30111 | 0.67 | 0.953393 |
Target: 5'- uGUGuGCAUCGGCAuugccGUCCGG-CUGCg -3' miRNA: 3'- gUACcUGUAGCUGU-----CAGGCUaGAUGg -5' |
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23312 | 3' | -50 | NC_005259.1 | + | 31210 | 0.66 | 0.965179 |
Target: 5'- aUcgGGAugcCGUUGAuCAGUCCGAUgagACCa -3' miRNA: 3'- -GuaCCU---GUAGCU-GUCAGGCUAga-UGG- -5' |
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23312 | 3' | -50 | NC_005259.1 | + | 41632 | 0.66 | 0.968594 |
Target: 5'- cCAUGG----UGGCGGUgCCGGUCUGCg -3' miRNA: 3'- -GUACCuguaGCUGUCA-GGCUAGAUGg -5' |
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23312 | 3' | -50 | NC_005259.1 | + | 43919 | 0.67 | 0.944192 |
Target: 5'- gAUGGGCAgCGACGacaCCGcgCUACUg -3' miRNA: 3'- gUACCUGUaGCUGUca-GGCuaGAUGG- -5' |
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23312 | 3' | -50 | NC_005259.1 | + | 51170 | 0.71 | 0.806639 |
Target: 5'- cCGUGG-CGagccacagaucgaucUCaGGCAGUCCGGUCUuACCg -3' miRNA: 3'- -GUACCuGU---------------AG-CUGUCAGGCUAGA-UGG- -5' |
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23312 | 3' | -50 | NC_005259.1 | + | 52832 | 0.66 | 0.9774 |
Target: 5'- --aGGGCAuccUCGACAcGgaccCCGAgCUGCCc -3' miRNA: 3'- guaCCUGU---AGCUGU-Ca---GGCUaGAUGG- -5' |
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23312 | 3' | -50 | NC_005259.1 | + | 54607 | 0.66 | 0.965179 |
Target: 5'- -cUGGuCAUUcuCGGUgCUGAUCUGCCg -3' miRNA: 3'- guACCuGUAGcuGUCA-GGCUAGAUGG- -5' |
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23312 | 3' | -50 | NC_005259.1 | + | 59656 | 0.66 | 0.965179 |
Target: 5'- -uUGGACAuuucUCGGguCAGUCaGAUCaUGCCu -3' miRNA: 3'- guACCUGU----AGCU--GUCAGgCUAG-AUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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