miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23312 5' -60.4 NC_005259.1 + 53168 0.66 0.499435
Target:  5'- -aGGCCGAUcucGCCaccGCCGCCCgucgcGGUg -3'
miRNA:   3'- uaCCGGCUA---UGGcacCGGUGGGa----CCG- -5'
23312 5' -60.4 NC_005259.1 + 45137 0.66 0.499435
Target:  5'- -aGGUCGGcaaucUGCUGaucgcucaGGCCGCCCUuGGCc -3'
miRNA:   3'- uaCCGGCU-----AUGGCa-------CCGGUGGGA-CCG- -5'
23312 5' -60.4 NC_005259.1 + 56795 0.66 0.498441
Target:  5'- --uGCCGAUGaacagaucgggguCgGUGGCCACCCauUGcGCg -3'
miRNA:   3'- uacCGGCUAU-------------GgCACCGGUGGG--AC-CG- -5'
23312 5' -60.4 NC_005259.1 + 28286 0.66 0.48953
Target:  5'- --uGCCGAUguagGCCacgGuGCCGCCCUGcGCa -3'
miRNA:   3'- uacCGGCUA----UGGca-C-CGGUGGGAC-CG- -5'
23312 5' -60.4 NC_005259.1 + 35505 0.66 0.48953
Target:  5'- uUGGCCccguUGCCGccGCCGCCg-GGCa -3'
miRNA:   3'- uACCGGcu--AUGGCacCGGUGGgaCCG- -5'
23312 5' -60.4 NC_005259.1 + 29911 0.66 0.483632
Target:  5'- gGUGGCUGcccgagaccaucgACgCGUGGCCGCCacgcGGCc -3'
miRNA:   3'- -UACCGGCua-----------UG-GCACCGGUGGga--CCG- -5'
23312 5' -60.4 NC_005259.1 + 45854 0.66 0.479718
Target:  5'- -gGGCCGGUgggaccgggcauGCCGgggaacaGGCCACCCgcuGUg -3'
miRNA:   3'- uaCCGGCUA------------UGGCa------CCGGUGGGac-CG- -5'
23312 5' -60.4 NC_005259.1 + 68624 0.66 0.479718
Target:  5'- uUGGCCa--GCCG-GG-CACCCUcGGCg -3'
miRNA:   3'- uACCGGcuaUGGCaCCgGUGGGA-CCG- -5'
23312 5' -60.4 NC_005259.1 + 15450 0.66 0.46039
Target:  5'- cUGGCCGAgaucaacCCGuUGGCCAaggcgcaacucuCgCUGGCc -3'
miRNA:   3'- uACCGGCUau-----GGC-ACCGGU------------GgGACCG- -5'
23312 5' -60.4 NC_005259.1 + 1365 0.66 0.46039
Target:  5'- -gGGCCGcucGCCGc-GCCGCCCgcgaGGCc -3'
miRNA:   3'- uaCCGGCua-UGGCacCGGUGGGa---CCG- -5'
23312 5' -60.4 NC_005259.1 + 55916 0.66 0.46039
Target:  5'- cUGGCCag-ACCGcUGGUCugCUcGGCg -3'
miRNA:   3'- uACCGGcuaUGGC-ACCGGugGGaCCG- -5'
23312 5' -60.4 NC_005259.1 + 16155 0.66 0.459434
Target:  5'- -aGGUugUGGUGuccacucCCGUGGCCGCCgaGGUc -3'
miRNA:   3'- uaCCG--GCUAU-------GGCACCGGUGGgaCCG- -5'
23312 5' -60.4 NC_005259.1 + 45551 0.67 0.450881
Target:  5'- -gGGuuGcucGCCG-GGCCACCCUuGCc -3'
miRNA:   3'- uaCCggCua-UGGCaCCGGUGGGAcCG- -5'
23312 5' -60.4 NC_005259.1 + 23347 0.67 0.450881
Target:  5'- -gGGCuCGAggcUGCCugcgaGGCCGCCgaGGCa -3'
miRNA:   3'- uaCCG-GCU---AUGGca---CCGGUGGgaCCG- -5'
23312 5' -60.4 NC_005259.1 + 58450 0.67 0.432194
Target:  5'- gGUGGCCuuGGUgAUCGcGGCCACCagugcgUGGCu -3'
miRNA:   3'- -UACCGG--CUA-UGGCaCCGGUGGg-----ACCG- -5'
23312 5' -60.4 NC_005259.1 + 60528 0.67 0.413966
Target:  5'- cAUGGCCGG-GCCGggacgcaGCCGCUCgucGGCa -3'
miRNA:   3'- -UACCGGCUaUGGCac-----CGGUGGGa--CCG- -5'
23312 5' -60.4 NC_005259.1 + 17830 0.67 0.413067
Target:  5'- -aGGCCaucgacgGGUggGCCGaGGCCACCCcgUGGUc -3'
miRNA:   3'- uaCCGG-------CUA--UGGCaCCGGUGGG--ACCG- -5'
23312 5' -60.4 NC_005259.1 + 44440 0.67 0.402375
Target:  5'- -cGGCCccgaagauguucuuGAgACCGgggaugccGCCGCCCUGGCc -3'
miRNA:   3'- uaCCGG--------------CUaUGGCac------CGGUGGGACCG- -5'
23312 5' -60.4 NC_005259.1 + 8167 0.68 0.39622
Target:  5'- cAUGGCCuGAggcuacccCCGUGGCCugccguuuacgcGCCCgaugucgGGCa -3'
miRNA:   3'- -UACCGG-CUau------GGCACCGG------------UGGGa------CCG- -5'
23312 5' -60.4 NC_005259.1 + 12057 0.68 0.390992
Target:  5'- -aGGCCGAgcucugcggcagacACCGagaUGGgCACCUUGGUg -3'
miRNA:   3'- uaCCGGCUa-------------UGGC---ACCgGUGGGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.