Results 41 - 43 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23312 | 5' | -60.4 | NC_005259.1 | + | 19252 | 0.76 | 0.11308 |
Target: 5'- gAUGGCCGccUGCCG-GGCCGCCCgaUGGa -3' miRNA: 3'- -UACCGGCu-AUGGCaCCGGUGGG--ACCg -5' |
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23312 | 5' | -60.4 | NC_005259.1 | + | 15550 | 0.85 | 0.023072 |
Target: 5'- cUGGCCGGUGCCacccucagGUGGCCACCCUcggGGCc -3' miRNA: 3'- uACCGGCUAUGG--------CACCGGUGGGA---CCG- -5' |
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23312 | 5' | -60.4 | NC_005259.1 | + | 15056 | 1.08 | 0.000456 |
Target: 5'- cAUGGCCGAUACCGUGGCCACCCUGGCc -3' miRNA: 3'- -UACCGGCUAUGGCACCGGUGGGACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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