miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23312 5' -60.4 NC_005259.1 + 57680 0.68 0.387532
Target:  5'- -cGGCCaaucgACCGUGGCCAgguugCCgGGCu -3'
miRNA:   3'- uaCCGGcua--UGGCACCGGUg----GGaCCG- -5'
23312 5' -60.4 NC_005259.1 + 8401 0.68 0.387532
Target:  5'- -cGG-CGA-GCCG-GGCCACCucgCUGGCg -3'
miRNA:   3'- uaCCgGCUaUGGCaCCGGUGG---GACCG- -5'
23312 5' -60.4 NC_005259.1 + 16624 0.68 0.378971
Target:  5'- -gGGCCGAgGCa--GGCCACCUacGGCg -3'
miRNA:   3'- uaCCGGCUaUGgcaCCGGUGGGa-CCG- -5'
23312 5' -60.4 NC_005259.1 + 58573 0.68 0.369701
Target:  5'- -gGGCCGGaucgcggcgcggcUGCCG-GGCCggaucuuuucgaGCgCCUGGCu -3'
miRNA:   3'- uaCCGGCU-------------AUGGCaCCGG------------UG-GGACCG- -5'
23312 5' -60.4 NC_005259.1 + 6109 0.68 0.362233
Target:  5'- --cGCCGAgGCCGaGGCCGCCgCUacgcgGGCa -3'
miRNA:   3'- uacCGGCUaUGGCaCCGGUGG-GA-----CCG- -5'
23312 5' -60.4 NC_005259.1 + 20155 0.69 0.346016
Target:  5'- --aGCCGGUGCCcUGGCCACcgcgcccgccgCCUcGGCu -3'
miRNA:   3'- uacCGGCUAUGGcACCGGUG-----------GGA-CCG- -5'
23312 5' -60.4 NC_005259.1 + 59878 0.69 0.330326
Target:  5'- uGUGGCCGAaACCGggGGCgACgcgaCUUGGUg -3'
miRNA:   3'- -UACCGGCUaUGGCa-CCGgUG----GGACCG- -5'
23312 5' -60.4 NC_005259.1 + 18330 0.69 0.322679
Target:  5'- -aGGCCGGUGCguuCGUGGUCgACgCCgacGGCg -3'
miRNA:   3'- uaCCGGCUAUG---GCACCGG-UG-GGa--CCG- -5'
23312 5' -60.4 NC_005259.1 + 40867 0.69 0.315166
Target:  5'- cAUGGCCGcccacaGCUcaccGGCCACCgUGGCg -3'
miRNA:   3'- -UACCGGCua----UGGca--CCGGUGGgACCG- -5'
23312 5' -60.4 NC_005259.1 + 67737 0.7 0.293423
Target:  5'- ---uCCGAUACCGgcggccacuaGGCCGCCCcGGCc -3'
miRNA:   3'- uaccGGCUAUGGCa---------CCGGUGGGaCCG- -5'
23312 5' -60.4 NC_005259.1 + 41388 0.7 0.293423
Target:  5'- uUGGCCGGUACCcaUGGCgCGCCgCUcggGGUg -3'
miRNA:   3'- uACCGGCUAUGGc-ACCG-GUGG-GA---CCG- -5'
23312 5' -60.4 NC_005259.1 + 26814 0.7 0.272868
Target:  5'- uUGGCCGGUACCGgcGGUggUGCCggGGCg -3'
miRNA:   3'- uACCGGCUAUGGCa-CCG--GUGGgaCCG- -5'
23312 5' -60.4 NC_005259.1 + 28970 0.71 0.253485
Target:  5'- -aGGUCGGUGCCGaGGCCgcgagcGCCCgcuacGGCc -3'
miRNA:   3'- uaCCGGCUAUGGCaCCGG------UGGGa----CCG- -5'
23312 5' -60.4 NC_005259.1 + 32538 0.72 0.218125
Target:  5'- -aGGCuUGAccuUGCUGuUGGCCGCCCcGGCg -3'
miRNA:   3'- uaCCG-GCU---AUGGC-ACCGGUGGGaCCG- -5'
23312 5' -60.4 NC_005259.1 + 37250 0.73 0.182286
Target:  5'- uUGGCUGccGCCGUugccaggcuugaGGCCGCCC-GGCa -3'
miRNA:   3'- uACCGGCuaUGGCA------------CCGGUGGGaCCG- -5'
23312 5' -60.4 NC_005259.1 + 13418 0.73 0.177614
Target:  5'- cUGGCCGGggucGCCGccggGGCCGCgCUaGGCg -3'
miRNA:   3'- uACCGGCUa---UGGCa---CCGGUGgGA-CCG- -5'
23312 5' -60.4 NC_005259.1 + 39507 0.73 0.173047
Target:  5'- gAUGGCCGc-GCCGcUGGCCACCaguccGGCc -3'
miRNA:   3'- -UACCGGCuaUGGC-ACCGGUGGga---CCG- -5'
23312 5' -60.4 NC_005259.1 + 45476 0.73 0.168586
Target:  5'- -gGGCCGAgcuucugGCCGcUGGUgGCCUUGGUc -3'
miRNA:   3'- uaCCGGCUa------UGGC-ACCGgUGGGACCG- -5'
23312 5' -60.4 NC_005259.1 + 45511 0.74 0.151758
Target:  5'- uGUGGCCaccgcGCCGguguUGGCCGCCgUGGCu -3'
miRNA:   3'- -UACCGGcua--UGGC----ACCGGUGGgACCG- -5'
23312 5' -60.4 NC_005259.1 + 15158 0.75 0.132873
Target:  5'- gGUGGCCGAgGCCGaGGCCAUCCUcgacacGCa -3'
miRNA:   3'- -UACCGGCUaUGGCaCCGGUGGGAc-----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.