miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23312 5' -60.4 NC_005259.1 + 1365 0.66 0.46039
Target:  5'- -gGGCCGcucGCCGc-GCCGCCCgcgaGGCc -3'
miRNA:   3'- uaCCGGCua-UGGCacCGGUGGGa---CCG- -5'
23312 5' -60.4 NC_005259.1 + 6109 0.68 0.362233
Target:  5'- --cGCCGAgGCCGaGGCCGCCgCUacgcgGGCa -3'
miRNA:   3'- uacCGGCUaUGGCaCCGGUGG-GA-----CCG- -5'
23312 5' -60.4 NC_005259.1 + 8167 0.68 0.39622
Target:  5'- cAUGGCCuGAggcuacccCCGUGGCCugccguuuacgcGCCCgaugucgGGCa -3'
miRNA:   3'- -UACCGG-CUau------GGCACCGG------------UGGGa------CCG- -5'
23312 5' -60.4 NC_005259.1 + 8401 0.68 0.387532
Target:  5'- -cGG-CGA-GCCG-GGCCACCucgCUGGCg -3'
miRNA:   3'- uaCCgGCUaUGGCaCCGGUGG---GACCG- -5'
23312 5' -60.4 NC_005259.1 + 12057 0.68 0.390992
Target:  5'- -aGGCCGAgcucugcggcagacACCGagaUGGgCACCUUGGUg -3'
miRNA:   3'- uaCCGGCUa-------------UGGC---ACCgGUGGGACCG- -5'
23312 5' -60.4 NC_005259.1 + 13418 0.73 0.177614
Target:  5'- cUGGCCGGggucGCCGccggGGCCGCgCUaGGCg -3'
miRNA:   3'- uACCGGCUa---UGGCa---CCGGUGgGA-CCG- -5'
23312 5' -60.4 NC_005259.1 + 15056 1.08 0.000456
Target:  5'- cAUGGCCGAUACCGUGGCCACCCUGGCc -3'
miRNA:   3'- -UACCGGCUAUGGCACCGGUGGGACCG- -5'
23312 5' -60.4 NC_005259.1 + 15158 0.75 0.132873
Target:  5'- gGUGGCCGAgGCCGaGGCCAUCCUcgacacGCa -3'
miRNA:   3'- -UACCGGCUaUGGCaCCGGUGGGAc-----CG- -5'
23312 5' -60.4 NC_005259.1 + 15450 0.66 0.46039
Target:  5'- cUGGCCGAgaucaacCCGuUGGCCAaggcgcaacucuCgCUGGCc -3'
miRNA:   3'- uACCGGCUau-----GGC-ACCGGU------------GgGACCG- -5'
23312 5' -60.4 NC_005259.1 + 15550 0.85 0.023072
Target:  5'- cUGGCCGGUGCCacccucagGUGGCCACCCUcggGGCc -3'
miRNA:   3'- uACCGGCUAUGG--------CACCGGUGGGA---CCG- -5'
23312 5' -60.4 NC_005259.1 + 16155 0.66 0.459434
Target:  5'- -aGGUugUGGUGuccacucCCGUGGCCGCCgaGGUc -3'
miRNA:   3'- uaCCG--GCUAU-------GGCACCGGUGGgaCCG- -5'
23312 5' -60.4 NC_005259.1 + 16624 0.68 0.378971
Target:  5'- -gGGCCGAgGCa--GGCCACCUacGGCg -3'
miRNA:   3'- uaCCGGCUaUGgcaCCGGUGGGa-CCG- -5'
23312 5' -60.4 NC_005259.1 + 17830 0.67 0.413067
Target:  5'- -aGGCCaucgacgGGUggGCCGaGGCCACCCcgUGGUc -3'
miRNA:   3'- uaCCGG-------CUA--UGGCaCCGGUGGG--ACCG- -5'
23312 5' -60.4 NC_005259.1 + 18330 0.69 0.322679
Target:  5'- -aGGCCGGUGCguuCGUGGUCgACgCCgacGGCg -3'
miRNA:   3'- uaCCGGCUAUG---GCACCGG-UG-GGa--CCG- -5'
23312 5' -60.4 NC_005259.1 + 19252 0.76 0.11308
Target:  5'- gAUGGCCGccUGCCG-GGCCGCCCgaUGGa -3'
miRNA:   3'- -UACCGGCu-AUGGCaCCGGUGGG--ACCg -5'
23312 5' -60.4 NC_005259.1 + 20155 0.69 0.346016
Target:  5'- --aGCCGGUGCCcUGGCCACcgcgcccgccgCCUcGGCu -3'
miRNA:   3'- uacCGGCUAUGGcACCGGUG-----------GGA-CCG- -5'
23312 5' -60.4 NC_005259.1 + 23347 0.67 0.450881
Target:  5'- -gGGCuCGAggcUGCCugcgaGGCCGCCgaGGCa -3'
miRNA:   3'- uaCCG-GCU---AUGGca---CCGGUGGgaCCG- -5'
23312 5' -60.4 NC_005259.1 + 26814 0.7 0.272868
Target:  5'- uUGGCCGGUACCGgcGGUggUGCCggGGCg -3'
miRNA:   3'- uACCGGCUAUGGCa-CCG--GUGGgaCCG- -5'
23312 5' -60.4 NC_005259.1 + 28286 0.66 0.48953
Target:  5'- --uGCCGAUguagGCCacgGuGCCGCCCUGcGCa -3'
miRNA:   3'- uacCGGCUA----UGGca-C-CGGUGGGAC-CG- -5'
23312 5' -60.4 NC_005259.1 + 28970 0.71 0.253485
Target:  5'- -aGGUCGGUGCCGaGGCCgcgagcGCCCgcuacGGCc -3'
miRNA:   3'- uaCCGGCUAUGGCaCCGG------UGGGa----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.