Results 21 - 40 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23312 | 5' | -60.4 | NC_005259.1 | + | 29911 | 0.66 | 0.483632 |
Target: 5'- gGUGGCUGcccgagaccaucgACgCGUGGCCGCCacgcGGCc -3' miRNA: 3'- -UACCGGCua-----------UG-GCACCGGUGGga--CCG- -5' |
|||||||
23312 | 5' | -60.4 | NC_005259.1 | + | 32538 | 0.72 | 0.218125 |
Target: 5'- -aGGCuUGAccuUGCUGuUGGCCGCCCcGGCg -3' miRNA: 3'- uaCCG-GCU---AUGGC-ACCGGUGGGaCCG- -5' |
|||||||
23312 | 5' | -60.4 | NC_005259.1 | + | 35505 | 0.66 | 0.48953 |
Target: 5'- uUGGCCccguUGCCGccGCCGCCg-GGCa -3' miRNA: 3'- uACCGGcu--AUGGCacCGGUGGgaCCG- -5' |
|||||||
23312 | 5' | -60.4 | NC_005259.1 | + | 37250 | 0.73 | 0.182286 |
Target: 5'- uUGGCUGccGCCGUugccaggcuugaGGCCGCCC-GGCa -3' miRNA: 3'- uACCGGCuaUGGCA------------CCGGUGGGaCCG- -5' |
|||||||
23312 | 5' | -60.4 | NC_005259.1 | + | 39507 | 0.73 | 0.173047 |
Target: 5'- gAUGGCCGc-GCCGcUGGCCACCaguccGGCc -3' miRNA: 3'- -UACCGGCuaUGGC-ACCGGUGGga---CCG- -5' |
|||||||
23312 | 5' | -60.4 | NC_005259.1 | + | 40867 | 0.69 | 0.315166 |
Target: 5'- cAUGGCCGcccacaGCUcaccGGCCACCgUGGCg -3' miRNA: 3'- -UACCGGCua----UGGca--CCGGUGGgACCG- -5' |
|||||||
23312 | 5' | -60.4 | NC_005259.1 | + | 41388 | 0.7 | 0.293423 |
Target: 5'- uUGGCCGGUACCcaUGGCgCGCCgCUcggGGUg -3' miRNA: 3'- uACCGGCUAUGGc-ACCG-GUGG-GA---CCG- -5' |
|||||||
23312 | 5' | -60.4 | NC_005259.1 | + | 44440 | 0.67 | 0.402375 |
Target: 5'- -cGGCCccgaagauguucuuGAgACCGgggaugccGCCGCCCUGGCc -3' miRNA: 3'- uaCCGG--------------CUaUGGCac------CGGUGGGACCG- -5' |
|||||||
23312 | 5' | -60.4 | NC_005259.1 | + | 45137 | 0.66 | 0.499435 |
Target: 5'- -aGGUCGGcaaucUGCUGaucgcucaGGCCGCCCUuGGCc -3' miRNA: 3'- uaCCGGCU-----AUGGCa-------CCGGUGGGA-CCG- -5' |
|||||||
23312 | 5' | -60.4 | NC_005259.1 | + | 45476 | 0.73 | 0.168586 |
Target: 5'- -gGGCCGAgcuucugGCCGcUGGUgGCCUUGGUc -3' miRNA: 3'- uaCCGGCUa------UGGC-ACCGgUGGGACCG- -5' |
|||||||
23312 | 5' | -60.4 | NC_005259.1 | + | 45511 | 0.74 | 0.151758 |
Target: 5'- uGUGGCCaccgcGCCGguguUGGCCGCCgUGGCu -3' miRNA: 3'- -UACCGGcua--UGGC----ACCGGUGGgACCG- -5' |
|||||||
23312 | 5' | -60.4 | NC_005259.1 | + | 45551 | 0.67 | 0.450881 |
Target: 5'- -gGGuuGcucGCCG-GGCCACCCUuGCc -3' miRNA: 3'- uaCCggCua-UGGCaCCGGUGGGAcCG- -5' |
|||||||
23312 | 5' | -60.4 | NC_005259.1 | + | 45854 | 0.66 | 0.479718 |
Target: 5'- -gGGCCGGUgggaccgggcauGCCGgggaacaGGCCACCCgcuGUg -3' miRNA: 3'- uaCCGGCUA------------UGGCa------CCGGUGGGac-CG- -5' |
|||||||
23312 | 5' | -60.4 | NC_005259.1 | + | 53168 | 0.66 | 0.499435 |
Target: 5'- -aGGCCGAUcucGCCaccGCCGCCCgucgcGGUg -3' miRNA: 3'- uaCCGGCUA---UGGcacCGGUGGGa----CCG- -5' |
|||||||
23312 | 5' | -60.4 | NC_005259.1 | + | 55916 | 0.66 | 0.46039 |
Target: 5'- cUGGCCag-ACCGcUGGUCugCUcGGCg -3' miRNA: 3'- uACCGGcuaUGGC-ACCGGugGGaCCG- -5' |
|||||||
23312 | 5' | -60.4 | NC_005259.1 | + | 56795 | 0.66 | 0.498441 |
Target: 5'- --uGCCGAUGaacagaucgggguCgGUGGCCACCCauUGcGCg -3' miRNA: 3'- uacCGGCUAU-------------GgCACCGGUGGG--AC-CG- -5' |
|||||||
23312 | 5' | -60.4 | NC_005259.1 | + | 57680 | 0.68 | 0.387532 |
Target: 5'- -cGGCCaaucgACCGUGGCCAgguugCCgGGCu -3' miRNA: 3'- uaCCGGcua--UGGCACCGGUg----GGaCCG- -5' |
|||||||
23312 | 5' | -60.4 | NC_005259.1 | + | 58450 | 0.67 | 0.432194 |
Target: 5'- gGUGGCCuuGGUgAUCGcGGCCACCagugcgUGGCu -3' miRNA: 3'- -UACCGG--CUA-UGGCaCCGGUGGg-----ACCG- -5' |
|||||||
23312 | 5' | -60.4 | NC_005259.1 | + | 58573 | 0.68 | 0.369701 |
Target: 5'- -gGGCCGGaucgcggcgcggcUGCCG-GGCCggaucuuuucgaGCgCCUGGCu -3' miRNA: 3'- uaCCGGCU-------------AUGGCaCCGG------------UG-GGACCG- -5' |
|||||||
23312 | 5' | -60.4 | NC_005259.1 | + | 59878 | 0.69 | 0.330326 |
Target: 5'- uGUGGCCGAaACCGggGGCgACgcgaCUUGGUg -3' miRNA: 3'- -UACCGGCUaUGGCa-CCGgUG----GGACCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home