Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23313 | 5' | -67.4 | NC_005259.1 | + | 41402 | 0.68 | 0.203721 |
Target: 5'- uGGCG-CGCCGCUCGgggugcccacgaUGUGCacGGGCCGc -3' miRNA: 3'- gCUGCgGCGGCGGGC------------GCACG--CCCGGC- -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 5192 | 0.69 | 0.159699 |
Target: 5'- cCGACGCCGCCGCCaaGCucaccGCGcucGCCGa -3' miRNA: 3'- -GCUGCGGCGGCGGg-CGca---CGCc--CGGC- -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 32316 | 0.69 | 0.151993 |
Target: 5'- uGA-GCCGCaguGCCCGCcaauuGUGCGcGGCCa -3' miRNA: 3'- gCUgCGGCGg--CGGGCG-----CACGC-CCGGc -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 29934 | 0.69 | 0.159699 |
Target: 5'- gCGugGCCGCCacgcgGCCCggucGCGgcuggugggGCGGGCgGu -3' miRNA: 3'- -GCugCGGCGG-----CGGG----CGCa--------CGCCCGgC- -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 36630 | 0.69 | 0.151993 |
Target: 5'- -cGCGCCGCCcgcaagGCCCGCGaucaGCGaGCCGc -3' miRNA: 3'- gcUGCGGCGG------CGGGCGCa---CGCcCGGC- -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 45395 | 0.69 | 0.151993 |
Target: 5'- uCGGgGUCGCCGCCgagCGCGcUGauGGCCGc -3' miRNA: 3'- -GCUgCGGCGGCGG---GCGC-ACgcCCGGC- -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 37398 | 0.69 | 0.161282 |
Target: 5'- gCGcCGCCcaugguguuguugacGCCGCCCGcCGUGCcauuGGCCa -3' miRNA: 3'- -GCuGCGG---------------CGGCGGGC-GCACGc---CCGGc -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 17184 | 0.69 | 0.171919 |
Target: 5'- gCGGCGCaggaaGCCGCgCGUGagGCGGGUa- -3' miRNA: 3'- -GCUGCGg----CGGCGgGCGCa-CGCCCGgc -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 43247 | 0.7 | 0.144625 |
Target: 5'- uGACGauGCCGCCCGCGc-CGGGUg- -3' miRNA: 3'- gCUGCggCGGCGGGCGCacGCCCGgc -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 9807 | 0.7 | 0.148267 |
Target: 5'- -cGCGCCacuaCCGCCCGCaccgccggGUGCGGcGCUGg -3' miRNA: 3'- gcUGCGGc---GGCGGGCG--------CACGCC-CGGC- -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 8884 | 0.7 | 0.135536 |
Target: 5'- -cACGCCGCCugagcgucacgcucgGCCUGC-UGaCGGGCCGc -3' miRNA: 3'- gcUGCGGCGG---------------CGGGCGcAC-GCCCGGC- -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 47964 | 0.7 | 0.130862 |
Target: 5'- uGGcCGCCgcGCCGCCCGCGaauaUGCcGGGCa- -3' miRNA: 3'- gCU-GCGG--CGGCGGGCGC----ACG-CCCGgc -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 30363 | 0.7 | 0.130534 |
Target: 5'- gGACGCCGauCUGCCCGC-UGCccggcgagaaaccGGGCCu -3' miRNA: 3'- gCUGCGGC--GGCGGGCGcACG-------------CCCGGc -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 33551 | 0.7 | 0.137586 |
Target: 5'- uCGuCGCCGgucaggaagaaCCGCCCgaacuugaccGCGUcGCGGGCCa -3' miRNA: 3'- -GCuGCGGC-----------GGCGGG----------CGCA-CGCCCGGc -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 60226 | 0.71 | 0.109652 |
Target: 5'- uCGGCGCUgagcucgcugGCaCGCuuGCGUGCGGGUg- -3' miRNA: 3'- -GCUGCGG----------CG-GCGggCGCACGCCCGgc -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 66251 | 0.71 | 0.118317 |
Target: 5'- uCGACGCagCGCgGCCCGCGc-CGGGCgGc -3' miRNA: 3'- -GCUGCG--GCGgCGGGCGCacGCCCGgC- -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 18294 | 0.71 | 0.121038 |
Target: 5'- cCGACgaGCCGCCguucuGCCCgGUGUGCGacaccgaGGCCGg -3' miRNA: 3'- -GCUG--CGGCGG-----CGGG-CGCACGC-------CCGGC- -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 37215 | 0.71 | 0.124443 |
Target: 5'- cCGcCGCCGCCGCCgGgGcGCuGGCCc -3' miRNA: 3'- -GCuGCGGCGGCGGgCgCaCGcCCGGc -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 41655 | 0.71 | 0.124443 |
Target: 5'- gGGCGCuCGgugagcgggauCUGCaCCGCGUGCGuGGCCa -3' miRNA: 3'- gCUGCG-GC-----------GGCG-GGCGCACGC-CCGGc -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 45964 | 0.72 | 0.100041 |
Target: 5'- cCGACGuuGCCgagcuuggcgaguguGUCCGCGUacaucuGCGGGUCGa -3' miRNA: 3'- -GCUGCggCGG---------------CGGGCGCA------CGCCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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