Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23313 | 5' | -67.4 | NC_005259.1 | + | 35643 | 0.68 | 0.189508 |
Target: 5'- cCGcCGCUGCCGCUgGCGaGgGuGGCCa -3' miRNA: 3'- -GCuGCGGCGGCGGgCGCaCgC-CCGGc -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 46946 | 0.68 | 0.184968 |
Target: 5'- -cGCGCCGCCGaCCGCGUugaGCuuguuGGCCa -3' miRNA: 3'- gcUGCGGCGGCgGGCGCA---CGc----CCGGc -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 1858 | 0.68 | 0.184519 |
Target: 5'- cCGAgaaaGCCGCCG-CCGCGUuccguaaGCaGGCCGc -3' miRNA: 3'- -GCUg---CGGCGGCgGGCGCA-------CGcCCGGC- -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 66723 | 0.68 | 0.176175 |
Target: 5'- uGAUGcCCGCCGCCaCGCG-GuCaGGCUGa -3' miRNA: 3'- gCUGC-GGCGGCGG-GCGCaC-GcCCGGC- -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 45532 | 0.67 | 0.229459 |
Target: 5'- ---gGCCGCCGUggCUGCGaGCGGGuuGc -3' miRNA: 3'- gcugCGGCGGCG--GGCGCaCGCCCggC- -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 35689 | 0.67 | 0.234925 |
Target: 5'- gCGACGCCG-UGCCCgGCGaG-GGGUCGc -3' miRNA: 3'- -GCUGCGGCgGCGGG-CGCaCgCCCGGC- -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 37537 | 0.67 | 0.234925 |
Target: 5'- uCGG-GCCGCCGUugUUGCGUGUGGuGuCCGa -3' miRNA: 3'- -GCUgCGGCGGCG--GGCGCACGCC-C-GGC- -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 41853 | 0.67 | 0.238816 |
Target: 5'- uCGACGgUGUCccacucgacgggcaGCaCCGUG-GCGGGCCGa -3' miRNA: 3'- -GCUGCgGCGG--------------CG-GGCGCaCGCCCGGC- -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 12217 | 0.67 | 0.240501 |
Target: 5'- cCGGCGCa-CCGCCCGCuG-GCcGGGCa- -3' miRNA: 3'- -GCUGCGgcGGCGGGCG-CaCG-CCCGgc -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 56111 | 0.67 | 0.229459 |
Target: 5'- gCGugGCCaCCGaaaCUGUGUGCGcuGCCGg -3' miRNA: 3'- -GCugCGGcGGCg--GGCGCACGCc-CGGC- -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 44884 | 0.67 | 0.228379 |
Target: 5'- cCGACG-CGCCccacgaguauuuUCCGCGcUGUGGGCCGc -3' miRNA: 3'- -GCUGCgGCGGc-----------GGGCGC-ACGCCCGGC- -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 50412 | 0.67 | 0.220936 |
Target: 5'- -cGCGCCGgUGCCUugaccggcucgggcaGCgGUGCGGGCuCGg -3' miRNA: 3'- gcUGCGGCgGCGGG---------------CG-CACGCCCG-GC- -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 41479 | 0.67 | 0.20866 |
Target: 5'- uGACGCCGUCGagcacgaccUCgGCGgugGCGGGCa- -3' miRNA: 3'- gCUGCGGCGGC---------GGgCGCa--CGCCCGgc -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 14225 | 0.67 | 0.20866 |
Target: 5'- cCGGCGCgCGUCGUgCGUau-CGGGCCGg -3' miRNA: 3'- -GCUGCG-GCGGCGgGCGcacGCCCGGC- -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 66839 | 0.67 | 0.213702 |
Target: 5'- uGGCucaUGCCGCCCGCa--CGGGCCa -3' miRNA: 3'- gCUGcg-GCGGCGGGCGcacGCCCGGc -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 56905 | 0.67 | 0.213702 |
Target: 5'- gCGugGCCGCCGCagcagGCGUGCccgcGUCGg -3' miRNA: 3'- -GCugCGGCGGCGgg---CGCACGcc--CGGC- -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 48179 | 0.67 | 0.213702 |
Target: 5'- --cCGCCGCCGCCgG-GUGuCGGaCCGg -3' miRNA: 3'- gcuGCGGCGGCGGgCgCAC-GCCcGGC- -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 45022 | 0.66 | 0.280737 |
Target: 5'- -cGCGCCGCCcugcuucaugagcuGCUCGCGguacCGGGUCa -3' miRNA: 3'- gcUGCGGCGG--------------CGGGCGCac--GCCCGGc -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 30085 | 0.66 | 0.246186 |
Target: 5'- cCGAUGUCGaCCGCCCuCGU-CGGaGCUGu -3' miRNA: 3'- -GCUGCGGC-GGCGGGcGCAcGCC-CGGC- -5' |
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23313 | 5' | -67.4 | NC_005259.1 | + | 60145 | 0.66 | 0.246186 |
Target: 5'- gCGGCcuugGCCGCCGCCUcaGCGgccucaCGGGCgGc -3' miRNA: 3'- -GCUG----CGGCGGCGGG--CGCac----GCCCGgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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