miRNA display CGI


Results 61 - 74 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23313 5' -67.4 NC_005259.1 + 51505 0.74 0.070459
Target:  5'- uCGACGCCGCCGaucucgaCgCGCGUGaccucgugcacgGGGCCGg -3'
miRNA:   3'- -GCUGCGGCGGCg------G-GCGCACg-----------CCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 55438 0.68 0.198884
Target:  5'- aCGACGCCGaCGaaCGCGUacaGGGCCa -3'
miRNA:   3'- -GCUGCGGCgGCggGCGCAcg-CCCGGc -5'
23313 5' -67.4 NC_005259.1 + 56111 0.67 0.229459
Target:  5'- gCGugGCCaCCGaaaCUGUGUGCGcuGCCGg -3'
miRNA:   3'- -GCugCGGcGGCg--GGCGCACGCc-CGGC- -5'
23313 5' -67.4 NC_005259.1 + 56270 0.66 0.245612
Target:  5'- -aGCGCCGCCGCCCGgccCGUaucgGCaccagcagaccacGuGGCCGg -3'
miRNA:   3'- gcUGCGGCGGCGGGC---GCA----CG-------------C-CCGGC- -5'
23313 5' -67.4 NC_005259.1 + 56905 0.67 0.213702
Target:  5'- gCGugGCCGCCGCagcagGCGUGCccgcGUCGg -3'
miRNA:   3'- -GCugCGGCGGCGgg---CGCACGcc--CGGC- -5'
23313 5' -67.4 NC_005259.1 + 57796 0.66 0.263911
Target:  5'- aGACGUugaagaccucgaCGCCGCCCGCacGCauGGCCa -3'
miRNA:   3'- gCUGCG------------GCGGCGGGCGcaCGc-CCGGc -5'
23313 5' -67.4 NC_005259.1 + 60145 0.66 0.246186
Target:  5'- gCGGCcuugGCCGCCGCCUcaGCGgccucaCGGGCgGc -3'
miRNA:   3'- -GCUG----CGGCGGCGGG--CGCac----GCCCGgC- -5'
23313 5' -67.4 NC_005259.1 + 60226 0.71 0.109652
Target:  5'- uCGGCGCUgagcucgcugGCaCGCuuGCGUGCGGGUg- -3'
miRNA:   3'- -GCUGCGG----------CG-GCGggCGCACGCCCGgc -5'
23313 5' -67.4 NC_005259.1 + 60541 0.66 0.263911
Target:  5'- gGACGCaGCCGCUCGuCGgcaugccCGGuGCCGa -3'
miRNA:   3'- gCUGCGgCGGCGGGC-GCac-----GCC-CGGC- -5'
23313 5' -67.4 NC_005259.1 + 62822 0.66 0.251982
Target:  5'- -aGCGCCGCuUGCCCGCGaggucgagcGCGcGGuuGa -3'
miRNA:   3'- gcUGCGGCG-GCGGGCGCa--------CGC-CCggC- -5'
23313 5' -67.4 NC_005259.1 + 65673 0.68 0.198884
Target:  5'- -uGCGCCuGUCccuacucgGCCCGaCGaGCGGGCCGa -3'
miRNA:   3'- gcUGCGG-CGG--------CGGGC-GCaCGCCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 66251 0.71 0.118317
Target:  5'- uCGACGCagCGCgGCCCGCGc-CGGGCgGc -3'
miRNA:   3'- -GCUGCG--GCGgCGGGCGCacGCCCGgC- -5'
23313 5' -67.4 NC_005259.1 + 66723 0.68 0.176175
Target:  5'- uGAUGcCCGCCGCCaCGCG-GuCaGGCUGa -3'
miRNA:   3'- gCUGC-GGCGGCGG-GCGCaC-GcCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 66839 0.67 0.213702
Target:  5'- uGGCucaUGCCGCCCGCa--CGGGCCa -3'
miRNA:   3'- gCUGcg-GCGGCGGGCGcacGCCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.