miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23313 5' -67.4 NC_005259.1 + 43963 0.75 0.057495
Target:  5'- gCGGgGCCGCCGCCUGaccgaGgGCGGuGCCGa -3'
miRNA:   3'- -GCUgCGGCGGCGGGCg----CaCGCC-CGGC- -5'
23313 5' -67.4 NC_005259.1 + 37570 0.75 0.054562
Target:  5'- uCGACuGCuCGCCGCCCGCGccgaucUGCaagcugaacgucGGGCCGa -3'
miRNA:   3'- -GCUG-CG-GCGGCGGGCGC------ACG------------CCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 45317 0.76 0.051775
Target:  5'- cCGAgGCCGCCGCCgaacUGCGUGgccugcgccgccUGGGCCGc -3'
miRNA:   3'- -GCUgCGGCGGCGG----GCGCAC------------GCCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 44467 0.76 0.047852
Target:  5'- gGAUGCCGCCGCCC-UG-GcCGGGCCa -3'
miRNA:   3'- gCUGCGGCGGCGGGcGCaC-GCCCGGc -5'
23313 5' -67.4 NC_005259.1 + 46884 0.78 0.0358
Target:  5'- -cGCGCCGCCGCCCGCGaugaGCGcccGCCGa -3'
miRNA:   3'- gcUGCGGCGGCGGGCGCa---CGCc--CGGC- -5'
23313 5' -67.4 NC_005259.1 + 45964 0.72 0.100041
Target:  5'- cCGACGuuGCCgagcuuggcgaguguGUCCGCGUacaucuGCGGGUCGa -3'
miRNA:   3'- -GCUGCggCGG---------------CGGGCGCA------CGCCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 60226 0.71 0.109652
Target:  5'- uCGGCGCUgagcucgcugGCaCGCuuGCGUGCGGGUg- -3'
miRNA:   3'- -GCUGCGG----------CG-GCGggCGCACGCCCGgc -5'
23313 5' -67.4 NC_005259.1 + 45395 0.69 0.151993
Target:  5'- uCGGgGUCGCCGCCgagCGCGcUGauGGCCGc -3'
miRNA:   3'- -GCUgCGGCGGCGG---GCGC-ACgcCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 36630 0.69 0.151993
Target:  5'- -cGCGCCGCCcgcaagGCCCGCGaucaGCGaGCCGc -3'
miRNA:   3'- gcUGCGGCGG------CGGGCGCa---CGCcCGGC- -5'
23313 5' -67.4 NC_005259.1 + 32316 0.69 0.151993
Target:  5'- uGA-GCCGCaguGCCCGCcaauuGUGCGcGGCCa -3'
miRNA:   3'- gCUgCGGCGg--CGGGCG-----CACGC-CCGGc -5'
23313 5' -67.4 NC_005259.1 + 9807 0.7 0.148267
Target:  5'- -cGCGCCacuaCCGCCCGCaccgccggGUGCGGcGCUGg -3'
miRNA:   3'- gcUGCGGc---GGCGGGCG--------CACGCC-CGGC- -5'
23313 5' -67.4 NC_005259.1 + 43247 0.7 0.144625
Target:  5'- uGACGauGCCGCCCGCGc-CGGGUg- -3'
miRNA:   3'- gCUGCggCGGCGGGCGCacGCCCGgc -5'
23313 5' -67.4 NC_005259.1 + 33551 0.7 0.137586
Target:  5'- uCGuCGCCGgucaggaagaaCCGCCCgaacuugaccGCGUcGCGGGCCa -3'
miRNA:   3'- -GCuGCGGC-----------GGCGGG----------CGCA-CGCCCGGc -5'
23313 5' -67.4 NC_005259.1 + 8884 0.7 0.135536
Target:  5'- -cACGCCGCCugagcgucacgcucgGCCUGC-UGaCGGGCCGc -3'
miRNA:   3'- gcUGCGGCGG---------------CGGGCGcAC-GCCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 47964 0.7 0.130862
Target:  5'- uGGcCGCCgcGCCGCCCGCGaauaUGCcGGGCa- -3'
miRNA:   3'- gCU-GCGG--CGGCGGGCGC----ACG-CCCGgc -5'
23313 5' -67.4 NC_005259.1 + 30363 0.7 0.130534
Target:  5'- gGACGCCGauCUGCCCGC-UGCccggcgagaaaccGGGCCu -3'
miRNA:   3'- gCUGCGGC--GGCGGGCGcACG-------------CCCGGc -5'
23313 5' -67.4 NC_005259.1 + 41655 0.71 0.124443
Target:  5'- gGGCGCuCGgugagcgggauCUGCaCCGCGUGCGuGGCCa -3'
miRNA:   3'- gCUGCG-GC-----------GGCG-GGCGCACGC-CCGGc -5'
23313 5' -67.4 NC_005259.1 + 37215 0.71 0.124443
Target:  5'- cCGcCGCCGCCGCCgGgGcGCuGGCCc -3'
miRNA:   3'- -GCuGCGGCGGCGGgCgCaCGcCCGGc -5'
23313 5' -67.4 NC_005259.1 + 18294 0.71 0.121038
Target:  5'- cCGACgaGCCGCCguucuGCCCgGUGUGCGacaccgaGGCCGg -3'
miRNA:   3'- -GCUG--CGGCGG-----CGGG-CGCACGC-------CCGGC- -5'
23313 5' -67.4 NC_005259.1 + 66251 0.71 0.118317
Target:  5'- uCGACGCagCGCgGCCCGCGc-CGGGCgGc -3'
miRNA:   3'- -GCUGCG--GCGgCGGGCGCacGCCCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.