miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23313 5' -67.4 NC_005259.1 + 35689 0.67 0.234925
Target:  5'- gCGACGCCG-UGCCCgGCGaG-GGGUCGc -3'
miRNA:   3'- -GCUGCGGCgGCGGG-CGCaCgCCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 45532 0.67 0.229459
Target:  5'- ---gGCCGCCGUggCUGCGaGCGGGuuGc -3'
miRNA:   3'- gcugCGGCGGCG--GGCGCaCGCCCggC- -5'
23313 5' -67.4 NC_005259.1 + 56111 0.67 0.229459
Target:  5'- gCGugGCCaCCGaaaCUGUGUGCGcuGCCGg -3'
miRNA:   3'- -GCugCGGcGGCg--GGCGCACGCc-CGGC- -5'
23313 5' -67.4 NC_005259.1 + 44884 0.67 0.228379
Target:  5'- cCGACG-CGCCccacgaguauuuUCCGCGcUGUGGGCCGc -3'
miRNA:   3'- -GCUGCgGCGGc-----------GGGCGC-ACGCCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 50412 0.67 0.220936
Target:  5'- -cGCGCCGgUGCCUugaccggcucgggcaGCgGUGCGGGCuCGg -3'
miRNA:   3'- gcUGCGGCgGCGGG---------------CG-CACGCCCG-GC- -5'
23313 5' -67.4 NC_005259.1 + 66839 0.67 0.213702
Target:  5'- uGGCucaUGCCGCCCGCa--CGGGCCa -3'
miRNA:   3'- gCUGcg-GCGGCGGGCGcacGCCCGGc -5'
23313 5' -67.4 NC_005259.1 + 48179 0.67 0.213702
Target:  5'- --cCGCCGCCGCCgG-GUGuCGGaCCGg -3'
miRNA:   3'- gcuGCGGCGGCGGgCgCAC-GCCcGGC- -5'
23313 5' -67.4 NC_005259.1 + 56905 0.67 0.213702
Target:  5'- gCGugGCCGCCGCagcagGCGUGCccgcGUCGg -3'
miRNA:   3'- -GCugCGGCGGCGgg---CGCACGcc--CGGC- -5'
23313 5' -67.4 NC_005259.1 + 14225 0.67 0.20866
Target:  5'- cCGGCGCgCGUCGUgCGUau-CGGGCCGg -3'
miRNA:   3'- -GCUGCG-GCGGCGgGCGcacGCCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 41479 0.67 0.20866
Target:  5'- uGACGCCGUCGagcacgaccUCgGCGgugGCGGGCa- -3'
miRNA:   3'- gCUGCGGCGGC---------GGgCGCa--CGCCCGgc -5'
23313 5' -67.4 NC_005259.1 + 41402 0.68 0.203721
Target:  5'- uGGCG-CGCCGCUCGgggugcccacgaUGUGCacGGGCCGc -3'
miRNA:   3'- gCUGCgGCGGCGGGC------------GCACG--CCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 55438 0.68 0.198884
Target:  5'- aCGACGCCGaCGaaCGCGUacaGGGCCa -3'
miRNA:   3'- -GCUGCGGCgGCggGCGCAcg-CCCGGc -5'
23313 5' -67.4 NC_005259.1 + 65673 0.68 0.198884
Target:  5'- -uGCGCCuGUCccuacucgGCCCGaCGaGCGGGCCGa -3'
miRNA:   3'- gcUGCGG-CGG--------CGGGC-GCaCGCCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 4434 0.68 0.198884
Target:  5'- cCGAgGUCgaGCCGCCCGUGcgaGUGGGCa- -3'
miRNA:   3'- -GCUgCGG--CGGCGGGCGCa--CGCCCGgc -5'
23313 5' -67.4 NC_005259.1 + 15393 0.68 0.198405
Target:  5'- cCGugGCCGCgcacucccaagggUGCgCUGCGUGCcaccaaGGCCGa -3'
miRNA:   3'- -GCugCGGCG-------------GCG-GGCGCACGc-----CCGGC- -5'
23313 5' -67.4 NC_005259.1 + 1365 0.68 0.194146
Target:  5'- gGGcCGCuCGCCGCgCCGCccGCGaGGCCc -3'
miRNA:   3'- gCU-GCG-GCGGCG-GGCGcaCGC-CCGGc -5'
23313 5' -67.4 NC_005259.1 + 44646 0.68 0.191352
Target:  5'- cCGGUGCCGCCGCCCGacucgaacgccacacCGUugggcaGCGuGGCCc -3'
miRNA:   3'- -GCUGCGGCGGCGGGC---------------GCA------CGC-CCGGc -5'
23313 5' -67.4 NC_005259.1 + 35643 0.68 0.189508
Target:  5'- cCGcCGCUGCCGCUgGCGaGgGuGGCCa -3'
miRNA:   3'- -GCuGCGGCGGCGGgCGCaCgC-CCGGc -5'
23313 5' -67.4 NC_005259.1 + 46946 0.68 0.184968
Target:  5'- -cGCGCCGCCGaCCGCGUugaGCuuguuGGCCa -3'
miRNA:   3'- gcUGCGGCGGCgGGCGCA---CGc----CCGGc -5'
23313 5' -67.4 NC_005259.1 + 1858 0.68 0.184519
Target:  5'- cCGAgaaaGCCGCCG-CCGCGUuccguaaGCaGGCCGc -3'
miRNA:   3'- -GCUg---CGGCGGCgGGCGCA-------CGcCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.