miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23314 5' -58 NC_005259.1 + 54331 0.66 0.687944
Target:  5'- -cUCGggGCc-AUCGGGCCagcaucgagggucGGGCAACGg -3'
miRNA:   3'- gcAGCa-CGcaUAGCCCGG-------------CCCGUUGC- -5'
23314 5' -58 NC_005259.1 + 20990 0.66 0.657652
Target:  5'- ----cUGCGUGU-GGGCCuacucGGGCGGCGa -3'
miRNA:   3'- gcagcACGCAUAgCCCGG-----CCCGUUGC- -5'
23314 5' -58 NC_005259.1 + 11391 0.66 0.640847
Target:  5'- uGUCgGUGUgccucaagcgguuucGgcUCGuGGCCGGuGCAACGg -3'
miRNA:   3'- gCAG-CACG---------------CauAGC-CCGGCC-CGUUGC- -5'
23314 5' -58 NC_005259.1 + 5061 0.67 0.626126
Target:  5'- gGUCGaGa-UcgUGGGCCGGGuCGACGg -3'
miRNA:   3'- gCAGCaCgcAuaGCCCGGCCC-GUUGC- -5'
23314 5' -58 NC_005259.1 + 58562 0.67 0.615616
Target:  5'- -cUCGgGCG-GUUGGGCCGGaucGCGGCGc -3'
miRNA:   3'- gcAGCaCGCaUAGCCCGGCC---CGUUGC- -5'
23314 5' -58 NC_005259.1 + 1430 0.67 0.594643
Target:  5'- aCGUCGUGC---UCGGGCUGGcacuGCucGCGu -3'
miRNA:   3'- -GCAGCACGcauAGCCCGGCC----CGu-UGC- -5'
23314 5' -58 NC_005259.1 + 8652 0.67 0.593597
Target:  5'- aCGagGcUGUG-GUCGGGCugccacgCGGGCAACGg -3'
miRNA:   3'- -GCagC-ACGCaUAGCCCG-------GCCCGUUGC- -5'
23314 5' -58 NC_005259.1 + 40045 0.67 0.573785
Target:  5'- gGUCGccgGUG-AUCGGGUCGGucGCGAUGa -3'
miRNA:   3'- gCAGCa--CGCaUAGCCCGGCC--CGUUGC- -5'
23314 5' -58 NC_005259.1 + 42042 0.68 0.542843
Target:  5'- gGUCGacUGCGcUGuccUCGGGgUGGGCGGCu -3'
miRNA:   3'- gCAGC--ACGC-AU---AGCCCgGCCCGUUGc -5'
23314 5' -58 NC_005259.1 + 51534 0.68 0.522521
Target:  5'- -cUCGUGCacg--GGGCCGGGCAAg- -3'
miRNA:   3'- gcAGCACGcauagCCCGGCCCGUUgc -5'
23314 5' -58 NC_005259.1 + 42333 0.69 0.473122
Target:  5'- uCGUCGUaaaccacgggGCGagcUCGGGCCGGuaGACa -3'
miRNA:   3'- -GCAGCA----------CGCau-AGCCCGGCCcgUUGc -5'
23314 5' -58 NC_005259.1 + 66238 0.69 0.470231
Target:  5'- gGUCGUGCagccAUCGacgcagcgcggcccGcGCCGGGCGGCGg -3'
miRNA:   3'- gCAGCACGca--UAGC--------------C-CGGCCCGUUGC- -5'
23314 5' -58 NC_005259.1 + 14160 0.7 0.417132
Target:  5'- gCGUCGUGUGgAUCucGCCGGGCGGg- -3'
miRNA:   3'- -GCAGCACGCaUAGccCGGCCCGUUgc -5'
23314 5' -58 NC_005259.1 + 51666 0.7 0.408198
Target:  5'- gCG-CGgGCGcGUCGGGCaCGGGCGcGCGa -3'
miRNA:   3'- -GCaGCaCGCaUAGCCCG-GCCCGU-UGC- -5'
23314 5' -58 NC_005259.1 + 45619 0.74 0.256335
Target:  5'- -cUCGaUGCccgcCGGGCCGGGCAGCGc -3'
miRNA:   3'- gcAGC-ACGcauaGCCCGGCCCGUUGC- -5'
23314 5' -58 NC_005259.1 + 10312 0.75 0.209923
Target:  5'- uCGUCGUaGuCGUcAUCGGGCUcGGCGACGg -3'
miRNA:   3'- -GCAGCA-C-GCA-UAGCCCGGcCCGUUGC- -5'
23314 5' -58 NC_005259.1 + 14232 1.09 0.000869
Target:  5'- gCGUCGUGCGUAUCGGGCCGGGCAACGa -3'
miRNA:   3'- -GCAGCACGCAUAGCCCGGCCCGUUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.