Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23314 | 5' | -58 | NC_005259.1 | + | 54331 | 0.66 | 0.687944 |
Target: 5'- -cUCGggGCc-AUCGGGCCagcaucgagggucGGGCAACGg -3' miRNA: 3'- gcAGCa-CGcaUAGCCCGG-------------CCCGUUGC- -5' |
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23314 | 5' | -58 | NC_005259.1 | + | 20990 | 0.66 | 0.657652 |
Target: 5'- ----cUGCGUGU-GGGCCuacucGGGCGGCGa -3' miRNA: 3'- gcagcACGCAUAgCCCGG-----CCCGUUGC- -5' |
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23314 | 5' | -58 | NC_005259.1 | + | 11391 | 0.66 | 0.640847 |
Target: 5'- uGUCgGUGUgccucaagcgguuucGgcUCGuGGCCGGuGCAACGg -3' miRNA: 3'- gCAG-CACG---------------CauAGC-CCGGCC-CGUUGC- -5' |
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23314 | 5' | -58 | NC_005259.1 | + | 5061 | 0.67 | 0.626126 |
Target: 5'- gGUCGaGa-UcgUGGGCCGGGuCGACGg -3' miRNA: 3'- gCAGCaCgcAuaGCCCGGCCC-GUUGC- -5' |
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23314 | 5' | -58 | NC_005259.1 | + | 58562 | 0.67 | 0.615616 |
Target: 5'- -cUCGgGCG-GUUGGGCCGGaucGCGGCGc -3' miRNA: 3'- gcAGCaCGCaUAGCCCGGCC---CGUUGC- -5' |
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23314 | 5' | -58 | NC_005259.1 | + | 1430 | 0.67 | 0.594643 |
Target: 5'- aCGUCGUGC---UCGGGCUGGcacuGCucGCGu -3' miRNA: 3'- -GCAGCACGcauAGCCCGGCC----CGu-UGC- -5' |
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23314 | 5' | -58 | NC_005259.1 | + | 8652 | 0.67 | 0.593597 |
Target: 5'- aCGagGcUGUG-GUCGGGCugccacgCGGGCAACGg -3' miRNA: 3'- -GCagC-ACGCaUAGCCCG-------GCCCGUUGC- -5' |
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23314 | 5' | -58 | NC_005259.1 | + | 40045 | 0.67 | 0.573785 |
Target: 5'- gGUCGccgGUG-AUCGGGUCGGucGCGAUGa -3' miRNA: 3'- gCAGCa--CGCaUAGCCCGGCC--CGUUGC- -5' |
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23314 | 5' | -58 | NC_005259.1 | + | 42042 | 0.68 | 0.542843 |
Target: 5'- gGUCGacUGCGcUGuccUCGGGgUGGGCGGCu -3' miRNA: 3'- gCAGC--ACGC-AU---AGCCCgGCCCGUUGc -5' |
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23314 | 5' | -58 | NC_005259.1 | + | 51534 | 0.68 | 0.522521 |
Target: 5'- -cUCGUGCacg--GGGCCGGGCAAg- -3' miRNA: 3'- gcAGCACGcauagCCCGGCCCGUUgc -5' |
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23314 | 5' | -58 | NC_005259.1 | + | 42333 | 0.69 | 0.473122 |
Target: 5'- uCGUCGUaaaccacgggGCGagcUCGGGCCGGuaGACa -3' miRNA: 3'- -GCAGCA----------CGCau-AGCCCGGCCcgUUGc -5' |
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23314 | 5' | -58 | NC_005259.1 | + | 66238 | 0.69 | 0.470231 |
Target: 5'- gGUCGUGCagccAUCGacgcagcgcggcccGcGCCGGGCGGCGg -3' miRNA: 3'- gCAGCACGca--UAGC--------------C-CGGCCCGUUGC- -5' |
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23314 | 5' | -58 | NC_005259.1 | + | 14160 | 0.7 | 0.417132 |
Target: 5'- gCGUCGUGUGgAUCucGCCGGGCGGg- -3' miRNA: 3'- -GCAGCACGCaUAGccCGGCCCGUUgc -5' |
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23314 | 5' | -58 | NC_005259.1 | + | 51666 | 0.7 | 0.408198 |
Target: 5'- gCG-CGgGCGcGUCGGGCaCGGGCGcGCGa -3' miRNA: 3'- -GCaGCaCGCaUAGCCCG-GCCCGU-UGC- -5' |
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23314 | 5' | -58 | NC_005259.1 | + | 45619 | 0.74 | 0.256335 |
Target: 5'- -cUCGaUGCccgcCGGGCCGGGCAGCGc -3' miRNA: 3'- gcAGC-ACGcauaGCCCGGCCCGUUGC- -5' |
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23314 | 5' | -58 | NC_005259.1 | + | 10312 | 0.75 | 0.209923 |
Target: 5'- uCGUCGUaGuCGUcAUCGGGCUcGGCGACGg -3' miRNA: 3'- -GCAGCA-C-GCA-UAGCCCGGcCCGUUGC- -5' |
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23314 | 5' | -58 | NC_005259.1 | + | 14232 | 1.09 | 0.000869 |
Target: 5'- gCGUCGUGCGUAUCGGGCCGGGCAACGa -3' miRNA: 3'- -GCAGCACGCAUAGCCCGGCCCGUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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