miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23315 3' -60.7 NC_005259.1 + 45481 0.66 0.487083
Target:  5'- gAGCuucUGGCcgcuGGUGGCCUugGU-CGCu -3'
miRNA:   3'- gUCGu--GCCG----CCACCGGAugCAcGCGu -5'
23315 3' -60.7 NC_005259.1 + 60421 0.66 0.477322
Target:  5'- -uGCuCGGgGGUGGCCcACG-GgGCGg -3'
miRNA:   3'- guCGuGCCgCCACCGGaUGCaCgCGU- -5'
23315 3' -60.7 NC_005259.1 + 13205 0.66 0.467658
Target:  5'- aAGCACaGCGG-GGCCaGCgGUGgGCc -3'
miRNA:   3'- gUCGUGcCGCCaCCGGaUG-CACgCGu -5'
23315 3' -60.7 NC_005259.1 + 29128 0.66 0.44864
Target:  5'- gAGCGCGGCGGUauucGCCU-CGcucaccGCGCu -3'
miRNA:   3'- gUCGUGCCGCCAc---CGGAuGCa-----CGCGu -5'
23315 3' -60.7 NC_005259.1 + 58938 0.67 0.439292
Target:  5'- gGGCGCGGUGGcagcgucGGCCUugGccaGCAg -3'
miRNA:   3'- gUCGUGCCGCCa------CCGGAugCacgCGU- -5'
23315 3' -60.7 NC_005259.1 + 10452 0.67 0.439292
Target:  5'- uGGCucgACGGCGGUGuCCUGCGcaGCGgGa -3'
miRNA:   3'- gUCG---UGCCGCCACcGGAUGCa-CGCgU- -5'
23315 3' -60.7 NC_005259.1 + 58558 0.67 0.430057
Target:  5'- aCGGCucgGGCGGUugGGCCggaucGCG-GCGCGg -3'
miRNA:   3'- -GUCGug-CCGCCA--CCGGa----UGCaCGCGU- -5'
23315 3' -60.7 NC_005259.1 + 38737 0.67 0.402169
Target:  5'- -cGUAcCGGCGGUGGCCcgcCGcaggccggugagcUGCGCGa -3'
miRNA:   3'- guCGU-GCCGCCACCGGau-GC-------------ACGCGU- -5'
23315 3' -60.7 NC_005259.1 + 31245 0.67 0.394291
Target:  5'- gGGCGCGGCGGUGccGCCccacACGc-CGCAg -3'
miRNA:   3'- gUCGUGCCGCCAC--CGGa---UGCacGCGU- -5'
23315 3' -60.7 NC_005259.1 + 51261 0.67 0.394291
Target:  5'- gCGGCuc-GCGGUGGUC-ACGgUGCGCGg -3'
miRNA:   3'- -GUCGugcCGCCACCGGaUGC-ACGCGU- -5'
23315 3' -60.7 NC_005259.1 + 58440 0.68 0.377145
Target:  5'- -uGCGCugauCGGUGGCCUugGUGauCGCGg -3'
miRNA:   3'- guCGUGcc--GCCACCGGAugCAC--GCGU- -5'
23315 3' -60.7 NC_005259.1 + 37085 0.68 0.368762
Target:  5'- -cGCAcCGGCGGUGGUgUagacGCGUGUGa- -3'
miRNA:   3'- guCGU-GCCGCCACCGgA----UGCACGCgu -5'
23315 3' -60.7 NC_005259.1 + 8774 0.68 0.368762
Target:  5'- cCAGCGCGGCGGUgaugagcucGGCCcGCuugGCGa- -3'
miRNA:   3'- -GUCGUGCCGCCA---------CCGGaUGca-CGCgu -5'
23315 3' -60.7 NC_005259.1 + 2147 0.68 0.352383
Target:  5'- -cGCACGGUGcUGGCCaGCG-GCGUc -3'
miRNA:   3'- guCGUGCCGCcACCGGaUGCaCGCGu -5'
23315 3' -60.7 NC_005259.1 + 41108 0.68 0.352383
Target:  5'- uCGGCGguaugacgauguCGGCGGU-GCCcGCGUcGCGCAg -3'
miRNA:   3'- -GUCGU------------GCCGCCAcCGGaUGCA-CGCGU- -5'
23315 3' -60.7 NC_005259.1 + 26411 0.68 0.352383
Target:  5'- gGGCGCGGCGGUG-CCgcCGUagaaCGCAc -3'
miRNA:   3'- gUCGUGCCGCCACcGGauGCAc---GCGU- -5'
23315 3' -60.7 NC_005259.1 + 4293 0.69 0.328796
Target:  5'- gAGCACGGacCGGcGGcCCUGCGaugaGCGCGa -3'
miRNA:   3'- gUCGUGCC--GCCaCC-GGAUGCa---CGCGU- -5'
23315 3' -60.7 NC_005259.1 + 63859 0.69 0.321197
Target:  5'- cCGGCGaGGUGGccggcUGGCCuUGCGUGgGCGu -3'
miRNA:   3'- -GUCGUgCCGCC-----ACCGG-AUGCACgCGU- -5'
23315 3' -60.7 NC_005259.1 + 35668 0.69 0.321197
Target:  5'- cCAGCGCGGUGGUGGUgcacagcgaCgcCGUGCccgGCGa -3'
miRNA:   3'- -GUCGUGCCGCCACCG---------GauGCACG---CGU- -5'
23315 3' -60.7 NC_005259.1 + 58335 0.69 0.321197
Target:  5'- gCAGCGagaucaGGuCGGUGGCCUcgggcACGU-CGCAg -3'
miRNA:   3'- -GUCGUg-----CC-GCCACCGGA-----UGCAcGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.