Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23315 | 3' | -60.7 | NC_005259.1 | + | 35668 | 0.69 | 0.321197 |
Target: 5'- cCAGCGCGGUGGUGGUgcacagcgaCgcCGUGCccgGCGa -3' miRNA: 3'- -GUCGUGCCGCCACCG---------GauGCACG---CGU- -5' |
|||||||
23315 | 3' | -60.7 | NC_005259.1 | + | 63859 | 0.69 | 0.321197 |
Target: 5'- cCGGCGaGGUGGccggcUGGCCuUGCGUGgGCGu -3' miRNA: 3'- -GUCGUgCCGCC-----ACCGG-AUGCACgCGU- -5' |
|||||||
23315 | 3' | -60.7 | NC_005259.1 | + | 4293 | 0.69 | 0.328796 |
Target: 5'- gAGCACGGacCGGcGGcCCUGCGaugaGCGCGa -3' miRNA: 3'- gUCGUGCC--GCCaCC-GGAUGCa---CGCGU- -5' |
|||||||
23315 | 3' | -60.7 | NC_005259.1 | + | 57314 | 0.7 | 0.292122 |
Target: 5'- gAGCAcCGGCGGUgucgguguGGUC-AUGUGCGCu -3' miRNA: 3'- gUCGU-GCCGCCA--------CCGGaUGCACGCGu -5' |
|||||||
23315 | 3' | -60.7 | NC_005259.1 | + | 37759 | 0.7 | 0.271696 |
Target: 5'- cCAGCGCGGUGGcc-CCUGCGggcacgaGCGCAu -3' miRNA: 3'- -GUCGUGCCGCCaccGGAUGCa------CGCGU- -5' |
|||||||
23315 | 3' | -60.7 | NC_005259.1 | + | 14070 | 1.08 | 0.000449 |
Target: 5'- cCAGCACGGCGGUGGCCUACGUGCGCAg -3' miRNA: 3'- -GUCGUGCCGCCACCGGAUGCACGCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home