miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23315 5' -53.9 NC_005259.1 + 58666 0.66 0.860347
Target:  5'- cGGUGCaccGGggUGCAgcuuCCAUCGCGg- -3'
miRNA:   3'- -CCACGc--CUuuGCGUac--GGUAGCGCac -5'
23315 5' -53.9 NC_005259.1 + 18841 0.66 0.860347
Target:  5'- cGGUGaGGGucuCGCcgGUGCCGUgcaacgguugcgCGCGUGg -3'
miRNA:   3'- -CCACgCCUuu-GCG--UACGGUA------------GCGCAC- -5'
23315 5' -53.9 NC_005259.1 + 20517 0.66 0.852068
Target:  5'- cGGUGUcccgagcacGGguGCGC-UGCCcgCaGCGUGg -3'
miRNA:   3'- -CCACG---------CCuuUGCGuACGGuaG-CGCAC- -5'
23315 5' -53.9 NC_005259.1 + 35215 0.66 0.843562
Target:  5'- aGGcgGCGaGGAACGUgaccGCCA-CGCGUGc -3'
miRNA:   3'- -CCa-CGC-CUUUGCGua--CGGUaGCGCAC- -5'
23315 5' -53.9 NC_005259.1 + 50281 0.66 0.834837
Target:  5'- cGGUGgCGGGAACGuCGugcacgcucUGCCAcUCGuCGUa -3'
miRNA:   3'- -CCAC-GCCUUUGC-GU---------ACGGU-AGC-GCAc -5'
23315 5' -53.9 NC_005259.1 + 50683 0.67 0.797934
Target:  5'- cGGUGCcgacGAGGCGCugcucGUCGUCGCGc- -3'
miRNA:   3'- -CCACGc---CUUUGCGua---CGGUAGCGCac -5'
23315 5' -53.9 NC_005259.1 + 67953 0.67 0.778417
Target:  5'- cGGUGCGGGuugugcuguAGCGCGcGCagcgGCGUGg -3'
miRNA:   3'- -CCACGCCU---------UUGCGUaCGguagCGCAC- -5'
23315 5' -53.9 NC_005259.1 + 9865 0.67 0.778417
Target:  5'- --cGCGGGAACGCGacgaUGUUGUCGCu-- -3'
miRNA:   3'- ccaCGCCUUUGCGU----ACGGUAGCGcac -5'
23315 5' -53.9 NC_005259.1 + 33711 0.68 0.748052
Target:  5'- cGGUGgaCGGAuucuGCGCgAUGauGUCGCGUGg -3'
miRNA:   3'- -CCAC--GCCUu---UGCG-UACggUAGCGCAC- -5'
23315 5' -53.9 NC_005259.1 + 32376 0.7 0.630064
Target:  5'- aGG-GCGGgcACuGCccGCCGUCGCGa- -3'
miRNA:   3'- -CCaCGCCuuUG-CGuaCGGUAGCGCac -5'
23315 5' -53.9 NC_005259.1 + 40458 0.71 0.586486
Target:  5'- cGGUGUGGuuGACGUAcUGCCGggccgCGCGg- -3'
miRNA:   3'- -CCACGCCu-UUGCGU-ACGGUa----GCGCac -5'
23315 5' -53.9 NC_005259.1 + 21068 0.71 0.575664
Target:  5'- cGUGUGGAcGCGUAUGCCgcuGUCGaCGcUGg -3'
miRNA:   3'- cCACGCCUuUGCGUACGG---UAGC-GC-AC- -5'
23315 5' -53.9 NC_005259.1 + 1991 0.71 0.553096
Target:  5'- cGGU-CGGAGuacaacuACGCG-GCCAUCGgGUGg -3'
miRNA:   3'- -CCAcGCCUU-------UGCGUaCGGUAGCgCAC- -5'
23315 5' -53.9 NC_005259.1 + 52776 0.72 0.491346
Target:  5'- cGGUGuCGGcAGCGUGUGCCGUCGaCa-- -3'
miRNA:   3'- -CCAC-GCCuUUGCGUACGGUAGC-Gcac -5'
23315 5' -53.9 NC_005259.1 + 48190 0.76 0.30397
Target:  5'- gGGUGuCGGAccGgGCAUGCCGUCGUaGUGg -3'
miRNA:   3'- -CCAC-GCCUu-UgCGUACGGUAGCG-CAC- -5'
23315 5' -53.9 NC_005259.1 + 14107 1.1 0.001678
Target:  5'- gGGUGCGGAAACGCAUGCCAUCGCGUGc -3'
miRNA:   3'- -CCACGCCUUUGCGUACGGUAGCGCAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.