miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23316 3' -53.5 NC_005259.1 + 9548 0.67 0.789804
Target:  5'- gAGAgcUGCCc-GGCCUCGaCCGcguCGGCg -3'
miRNA:   3'- -UCUauACGGuuCUGGAGC-GGCu--GCUG- -5'
23316 3' -53.5 NC_005259.1 + 36871 0.67 0.789804
Target:  5'- ----uUGCUGGcACCgcccgCGCCGACGACg -3'
miRNA:   3'- ucuauACGGUUcUGGa----GCGGCUGCUG- -5'
23316 3' -53.5 NC_005259.1 + 12140 0.67 0.789804
Target:  5'- cGGGUcUGCUuucuuGAUCacCGCCGACGGCa -3'
miRNA:   3'- -UCUAuACGGuu---CUGGa-GCGGCUGCUG- -5'
23316 3' -53.5 NC_005259.1 + 56224 0.67 0.779912
Target:  5'- -uGUAUGCC-AGuCgUCGCCGcCGACc -3'
miRNA:   3'- ucUAUACGGuUCuGgAGCGGCuGCUG- -5'
23316 3' -53.5 NC_005259.1 + 4333 0.68 0.769866
Target:  5'- ---cGUGCC-GGACCUCGUCG-CGGu -3'
miRNA:   3'- ucuaUACGGuUCUGGAGCGGCuGCUg -5'
23316 3' -53.5 NC_005259.1 + 18315 0.68 0.756597
Target:  5'- cGGUGUGCgacacCGAGGCCggUgcguucguggucgaCGCCGACGGCg -3'
miRNA:   3'- uCUAUACG-----GUUCUGG--A--------------GCGGCUGCUG- -5'
23316 3' -53.5 NC_005259.1 + 29434 0.68 0.749361
Target:  5'- aGGAUGUaccucggccucaGCCAGcguGACCUUGCCGccCGGCu -3'
miRNA:   3'- -UCUAUA------------CGGUU---CUGGAGCGGCu-GCUG- -5'
23316 3' -53.5 NC_005259.1 + 44986 0.68 0.738924
Target:  5'- cGGUGcgacUGCCGAGGCaC-CGCCGACcGCc -3'
miRNA:   3'- uCUAU----ACGGUUCUG-GaGCGGCUGcUG- -5'
23316 3' -53.5 NC_005259.1 + 13678 0.68 0.738924
Target:  5'- cGGUGUGCUcguGGACCcgUgGCCGGuCGACc -3'
miRNA:   3'- uCUAUACGGu--UCUGG--AgCGGCU-GCUG- -5'
23316 3' -53.5 NC_005259.1 + 60198 0.68 0.717738
Target:  5'- cGAccggGCCAcGAUCUCGCCGAucucguCGGCg -3'
miRNA:   3'- uCUaua-CGGUuCUGGAGCGGCU------GCUG- -5'
23316 3' -53.5 NC_005259.1 + 48622 0.68 0.717738
Target:  5'- ---cGUGCgCAcuGCCUCGCCGA-GACg -3'
miRNA:   3'- ucuaUACG-GUucUGGAGCGGCUgCUG- -5'
23316 3' -53.5 NC_005259.1 + 28620 0.68 0.717738
Target:  5'- uGAUGgccaagGCCAAGGCCaccggUGCCGACa-- -3'
miRNA:   3'- uCUAUa-----CGGUUCUGGa----GCGGCUGcug -5'
23316 3' -53.5 NC_005259.1 + 64802 0.69 0.696213
Target:  5'- -uGUGUGCCucGGCCUCGgCGGCa-- -3'
miRNA:   3'- ucUAUACGGuuCUGGAGCgGCUGcug -5'
23316 3' -53.5 NC_005259.1 + 6937 0.69 0.663487
Target:  5'- -----cGCCuuGAGGCCgagcucgcCGCCGACGGCa -3'
miRNA:   3'- ucuauaCGG--UUCUGGa-------GCGGCUGCUG- -5'
23316 3' -53.5 NC_005259.1 + 28326 0.69 0.663487
Target:  5'- cGGUGUGCCGu--CCUUGgCGGCGAa -3'
miRNA:   3'- uCUAUACGGUucuGGAGCgGCUGCUg -5'
23316 3' -53.5 NC_005259.1 + 47952 0.7 0.652505
Target:  5'- cGGcgGUGCCGAuGGCCgccgCGCCGcccGCGAa -3'
miRNA:   3'- -UCuaUACGGUU-CUGGa---GCGGC---UGCUg -5'
23316 3' -53.5 NC_005259.1 + 43135 0.7 0.641505
Target:  5'- -----aGCC----CCUCGCCGACGACa -3'
miRNA:   3'- ucuauaCGGuucuGGAGCGGCUGCUG- -5'
23316 3' -53.5 NC_005259.1 + 58461 0.7 0.640404
Target:  5'- uGAUcgcgGCCAccAGugCguggcugUCGCCGACGACa -3'
miRNA:   3'- uCUAua--CGGU--UCugG-------AGCGGCUGCUG- -5'
23316 3' -53.5 NC_005259.1 + 18489 0.7 0.630496
Target:  5'- -----cGCCGAcGAgCUaCGCCGACGACc -3'
miRNA:   3'- ucuauaCGGUU-CUgGA-GCGGCUGCUG- -5'
23316 3' -53.5 NC_005259.1 + 46537 0.7 0.608493
Target:  5'- gGGAUc-GCCGAGAUCuggUCGCCGACcGCg -3'
miRNA:   3'- -UCUAuaCGGUUCUGG---AGCGGCUGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.