miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23316 5' -56.4 NC_005259.1 + 57443 0.66 0.737014
Target:  5'- -cGCGGCGAGgu-UGGUGCGACGc-- -3'
miRNA:   3'- gcCGCUGCUCgucACCACGCUGUagu -5'
23316 5' -56.4 NC_005259.1 + 19187 0.66 0.737014
Target:  5'- aCGGUGcccucgacaGCGAGCucGUGGUGCgGGCggCGa -3'
miRNA:   3'- -GCCGC---------UGCUCGu-CACCACG-CUGuaGU- -5'
23316 5' -56.4 NC_005259.1 + 53670 0.66 0.705829
Target:  5'- aGGCcccacGCGGGCAucgcgaUGGUGCGACcgGUCAa -3'
miRNA:   3'- gCCGc----UGCUCGUc-----ACCACGCUG--UAGU- -5'
23316 5' -56.4 NC_005259.1 + 978 0.67 0.684677
Target:  5'- aCGGCGACGAGaCAccggcagccguGUGGUguacGCGAUAc-- -3'
miRNA:   3'- -GCCGCUGCUC-GU-----------CACCA----CGCUGUagu -5'
23316 5' -56.4 NC_005259.1 + 68893 0.67 0.684677
Target:  5'- aGGUaGAUGAgGCGGUGGUuuGugGUCAu -3'
miRNA:   3'- gCCG-CUGCU-CGUCACCAcgCugUAGU- -5'
23316 5' -56.4 NC_005259.1 + 59080 0.67 0.681486
Target:  5'- cCGGCcuuguGGCGGGCAGUGaugacGUugaugucagcacgcGCGGCAUCGa -3'
miRNA:   3'- -GCCG-----CUGCUCGUCAC-----CA--------------CGCUGUAGU- -5'
23316 5' -56.4 NC_005259.1 + 42589 0.67 0.64188
Target:  5'- aGGCGugaGCGAGCAGU----CGACAUCGg -3'
miRNA:   3'- gCCGC---UGCUCGUCAccacGCUGUAGU- -5'
23316 5' -56.4 NC_005259.1 + 50428 0.68 0.577601
Target:  5'- cCGGCu-CGGGCAGcGGUGCGGgcUCGg -3'
miRNA:   3'- -GCCGcuGCUCGUCaCCACGCUguAGU- -5'
23316 5' -56.4 NC_005259.1 + 34572 0.68 0.566991
Target:  5'- aCGGCGAgGuucucggacaGGCAGacgcgcGGUGuCGACAUCAc -3'
miRNA:   3'- -GCCGCUgC----------UCGUCa-----CCAC-GCUGUAGU- -5'
23316 5' -56.4 NC_005259.1 + 27383 0.69 0.556431
Target:  5'- aCGGUGACcGGCGGcGGUGuCGGCAg-- -3'
miRNA:   3'- -GCCGCUGcUCGUCaCCAC-GCUGUagu -5'
23316 5' -56.4 NC_005259.1 + 8222 0.69 0.556431
Target:  5'- -aGCGAgCGuGCGGUGGUGcCGACAc-- -3'
miRNA:   3'- gcCGCU-GCuCGUCACCAC-GCUGUagu -5'
23316 5' -56.4 NC_005259.1 + 63068 0.69 0.545929
Target:  5'- -cGCGAUGAGCucagGGUucuuGGUGaCGACAUCGg -3'
miRNA:   3'- gcCGCUGCUCG----UCA----CCAC-GCUGUAGU- -5'
23316 5' -56.4 NC_005259.1 + 14058 0.69 0.512784
Target:  5'- uCGGCGACGAgaccagcacgGCGGUGGccuacgugcgcaGCGAgGUCGa -3'
miRNA:   3'- -GCCGCUGCU----------CGUCACCa-----------CGCUgUAGU- -5'
23316 5' -56.4 NC_005259.1 + 10333 0.71 0.426538
Target:  5'- uCGGCGACGggcucggcGGCAGcGGgcuCGACAUCGg -3'
miRNA:   3'- -GCCGCUGC--------UCGUCaCCac-GCUGUAGU- -5'
23316 5' -56.4 NC_005259.1 + 60621 0.74 0.301479
Target:  5'- aGGCGGCGAGguGUGGaacUGCG-CGUa- -3'
miRNA:   3'- gCCGCUGCUCguCACC---ACGCuGUAgu -5'
23316 5' -56.4 NC_005259.1 + 27176 0.74 0.287111
Target:  5'- uCGGCGAUGAGCAG-GcUGCGACGc-- -3'
miRNA:   3'- -GCCGCUGCUCGUCaCcACGCUGUagu -5'
23316 5' -56.4 NC_005259.1 + 13784 1.09 0.001104
Target:  5'- aCGGCGACGAGCAGUGGUGCGACAUCAc -3'
miRNA:   3'- -GCCGCUGCUCGUCACCACGCUGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.