Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23316 | 5' | -56.4 | NC_005259.1 | + | 57443 | 0.66 | 0.737014 |
Target: 5'- -cGCGGCGAGgu-UGGUGCGACGc-- -3' miRNA: 3'- gcCGCUGCUCgucACCACGCUGUagu -5' |
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23316 | 5' | -56.4 | NC_005259.1 | + | 19187 | 0.66 | 0.737014 |
Target: 5'- aCGGUGcccucgacaGCGAGCucGUGGUGCgGGCggCGa -3' miRNA: 3'- -GCCGC---------UGCUCGu-CACCACG-CUGuaGU- -5' |
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23316 | 5' | -56.4 | NC_005259.1 | + | 53670 | 0.66 | 0.705829 |
Target: 5'- aGGCcccacGCGGGCAucgcgaUGGUGCGACcgGUCAa -3' miRNA: 3'- gCCGc----UGCUCGUc-----ACCACGCUG--UAGU- -5' |
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23316 | 5' | -56.4 | NC_005259.1 | + | 978 | 0.67 | 0.684677 |
Target: 5'- aCGGCGACGAGaCAccggcagccguGUGGUguacGCGAUAc-- -3' miRNA: 3'- -GCCGCUGCUC-GU-----------CACCA----CGCUGUagu -5' |
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23316 | 5' | -56.4 | NC_005259.1 | + | 68893 | 0.67 | 0.684677 |
Target: 5'- aGGUaGAUGAgGCGGUGGUuuGugGUCAu -3' miRNA: 3'- gCCG-CUGCU-CGUCACCAcgCugUAGU- -5' |
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23316 | 5' | -56.4 | NC_005259.1 | + | 59080 | 0.67 | 0.681486 |
Target: 5'- cCGGCcuuguGGCGGGCAGUGaugacGUugaugucagcacgcGCGGCAUCGa -3' miRNA: 3'- -GCCG-----CUGCUCGUCAC-----CA--------------CGCUGUAGU- -5' |
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23316 | 5' | -56.4 | NC_005259.1 | + | 42589 | 0.67 | 0.64188 |
Target: 5'- aGGCGugaGCGAGCAGU----CGACAUCGg -3' miRNA: 3'- gCCGC---UGCUCGUCAccacGCUGUAGU- -5' |
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23316 | 5' | -56.4 | NC_005259.1 | + | 50428 | 0.68 | 0.577601 |
Target: 5'- cCGGCu-CGGGCAGcGGUGCGGgcUCGg -3' miRNA: 3'- -GCCGcuGCUCGUCaCCACGCUguAGU- -5' |
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23316 | 5' | -56.4 | NC_005259.1 | + | 34572 | 0.68 | 0.566991 |
Target: 5'- aCGGCGAgGuucucggacaGGCAGacgcgcGGUGuCGACAUCAc -3' miRNA: 3'- -GCCGCUgC----------UCGUCa-----CCAC-GCUGUAGU- -5' |
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23316 | 5' | -56.4 | NC_005259.1 | + | 27383 | 0.69 | 0.556431 |
Target: 5'- aCGGUGACcGGCGGcGGUGuCGGCAg-- -3' miRNA: 3'- -GCCGCUGcUCGUCaCCAC-GCUGUagu -5' |
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23316 | 5' | -56.4 | NC_005259.1 | + | 8222 | 0.69 | 0.556431 |
Target: 5'- -aGCGAgCGuGCGGUGGUGcCGACAc-- -3' miRNA: 3'- gcCGCU-GCuCGUCACCAC-GCUGUagu -5' |
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23316 | 5' | -56.4 | NC_005259.1 | + | 63068 | 0.69 | 0.545929 |
Target: 5'- -cGCGAUGAGCucagGGUucuuGGUGaCGACAUCGg -3' miRNA: 3'- gcCGCUGCUCG----UCA----CCAC-GCUGUAGU- -5' |
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23316 | 5' | -56.4 | NC_005259.1 | + | 14058 | 0.69 | 0.512784 |
Target: 5'- uCGGCGACGAgaccagcacgGCGGUGGccuacgugcgcaGCGAgGUCGa -3' miRNA: 3'- -GCCGCUGCU----------CGUCACCa-----------CGCUgUAGU- -5' |
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23316 | 5' | -56.4 | NC_005259.1 | + | 10333 | 0.71 | 0.426538 |
Target: 5'- uCGGCGACGggcucggcGGCAGcGGgcuCGACAUCGg -3' miRNA: 3'- -GCCGCUGC--------UCGUCaCCac-GCUGUAGU- -5' |
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23316 | 5' | -56.4 | NC_005259.1 | + | 60621 | 0.74 | 0.301479 |
Target: 5'- aGGCGGCGAGguGUGGaacUGCG-CGUa- -3' miRNA: 3'- gCCGCUGCUCguCACC---ACGCuGUAgu -5' |
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23316 | 5' | -56.4 | NC_005259.1 | + | 27176 | 0.74 | 0.287111 |
Target: 5'- uCGGCGAUGAGCAG-GcUGCGACGc-- -3' miRNA: 3'- -GCCGCUGCUCGUCaCcACGCUGUagu -5' |
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23316 | 5' | -56.4 | NC_005259.1 | + | 13784 | 1.09 | 0.001104 |
Target: 5'- aCGGCGACGAGCAGUGGUGCGACAUCAc -3' miRNA: 3'- -GCCGCUGCUCGUCACCACGCUGUAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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