miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23317 3' -61.8 NC_005259.1 + 18966 0.66 0.461405
Target:  5'- gGGUGACCuCGCcGCGuacAUCGCCCgGCa -3'
miRNA:   3'- -CCAUUGG-GUGcCGCcc-UGGCGGGgCG- -5'
23317 3' -61.8 NC_005259.1 + 21524 0.66 0.452191
Target:  5'- ---cGCCUgcuguaGCGGCGaGGACUGCCgacucagagaCCGCg -3'
miRNA:   3'- ccauUGGG------UGCCGC-CCUGGCGG----------GGCG- -5'
23317 3' -61.8 NC_005259.1 + 6554 0.67 0.443078
Target:  5'- cGGUGaaGCUgugCGCGGCGugucaGGCCGCCUCGg -3'
miRNA:   3'- -CCAU--UGG---GUGCCGCc----CUGGCGGGGCg -5'
23317 3' -61.8 NC_005259.1 + 35612 0.67 0.434069
Target:  5'- -cUGGCCaCGCuGCGucgaguaguucGGGCCGCCgCCGCu -3'
miRNA:   3'- ccAUUGG-GUGcCGC-----------CCUGGCGG-GGCG- -5'
23317 3' -61.8 NC_005259.1 + 53095 0.67 0.434069
Target:  5'- gGGUAACUUAguucuuguCaGCGGGACgGaCCCGCu -3'
miRNA:   3'- -CCAUUGGGU--------GcCGCCCUGgCgGGGCG- -5'
23317 3' -61.8 NC_005259.1 + 42758 0.67 0.434069
Target:  5'- cGGUucucgaucuGCUCgGCGGUcucGGGGCCGCCaCCGa -3'
miRNA:   3'- -CCAu--------UGGG-UGCCG---CCCUGGCGG-GGCg -5'
23317 3' -61.8 NC_005259.1 + 8758 0.67 0.425167
Target:  5'- aGGUcgaGGCCCuuggccagcGCGGCGGuGAugagcUCGgCCCGCu -3'
miRNA:   3'- -CCA---UUGGG---------UGCCGCC-CU-----GGCgGGGCG- -5'
23317 3' -61.8 NC_005259.1 + 5641 0.67 0.41289
Target:  5'- cGU-GCCCggcgaggACGGCGGGcgcuACacgcgcgacaacauCGCCCCGCa -3'
miRNA:   3'- cCAuUGGG-------UGCCGCCC----UG--------------GCGGGGCG- -5'
23317 3' -61.8 NC_005259.1 + 13450 0.67 0.407696
Target:  5'- cGUGACCguCGGCGcGGcgcuggugcucACCGCgCUGCc -3'
miRNA:   3'- cCAUUGGguGCCGC-CC-----------UGGCGgGGCG- -5'
23317 3' -61.8 NC_005259.1 + 51424 0.67 0.407696
Target:  5'- cGGUugaggUCUugGGCGGG-CCacgggGCCUCGCg -3'
miRNA:   3'- -CCAuu---GGGugCCGCCCuGG-----CGGGGCG- -5'
23317 3' -61.8 NC_005259.1 + 45006 0.67 0.407696
Target:  5'- ---cGCCgACcGcCGGGGCCGCgCCGCc -3'
miRNA:   3'- ccauUGGgUGcC-GCCCUGGCGgGGCG- -5'
23317 3' -61.8 NC_005259.1 + 29646 0.67 0.407696
Target:  5'- uGGcgAACCUcaagACGaaUGGGACCGCCUCGUu -3'
miRNA:   3'- -CCa-UUGGG----UGCc-GCCCUGGCGGGGCG- -5'
23317 3' -61.8 NC_005259.1 + 23643 0.67 0.39913
Target:  5'- uGGUuucGGCCCgccgacggcgACGGCuGGACCGCcgacCCCGa -3'
miRNA:   3'- -CCA---UUGGG----------UGCCGcCCUGGCG----GGGCg -5'
23317 3' -61.8 NC_005259.1 + 8557 0.67 0.39913
Target:  5'- uGUAGCCCAUGcGCcgcaGcACCGCCaCCGCc -3'
miRNA:   3'- cCAUUGGGUGC-CGc---CcUGGCGG-GGCG- -5'
23317 3' -61.8 NC_005259.1 + 4486 0.68 0.390681
Target:  5'- cGGUGGaCCAUGGU--GAUCGCCaCCGCg -3'
miRNA:   3'- -CCAUUgGGUGCCGccCUGGCGG-GGCG- -5'
23317 3' -61.8 NC_005259.1 + 60580 0.68 0.390681
Target:  5'- aGGcGGCCCACGGCgagucGGGuGCCGUCaucgaGCa -3'
miRNA:   3'- -CCaUUGGGUGCCG-----CCC-UGGCGGgg---CG- -5'
23317 3' -61.8 NC_005259.1 + 20517 0.68 0.390681
Target:  5'- cGGUGuCCCGagcaCGGGugCGCugCCCGCa -3'
miRNA:   3'- -CCAUuGGGUgcc-GCCCugGCG--GGGCG- -5'
23317 3' -61.8 NC_005259.1 + 6191 0.68 0.382349
Target:  5'- gGGUGAUCUgagcaGCGugaGCGGGgugaGCCGCCgCGCc -3'
miRNA:   3'- -CCAUUGGG-----UGC---CGCCC----UGGCGGgGCG- -5'
23317 3' -61.8 NC_005259.1 + 50111 0.68 0.374136
Target:  5'- aGGUuGCCCguACGcaCGGGcACCGCCacaCGCg -3'
miRNA:   3'- -CCAuUGGG--UGCc-GCCC-UGGCGGg--GCG- -5'
23317 3' -61.8 NC_005259.1 + 47933 0.68 0.373321
Target:  5'- --aGGCCCuggaagccgaugACGGCGGugccgauGGCCGCCgCGCc -3'
miRNA:   3'- ccaUUGGG------------UGCCGCC-------CUGGCGGgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.