miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23319 5' -64.9 NC_005259.1 + 35250 0.67 0.255401
Target:  5'- uGCGCACucgcguuguucgCGCCCGCcGcGCCGGGg--- -3'
miRNA:   3'- cCGCGUG------------GCGGGCGaC-CGGCCCguua -5'
23319 5' -64.9 NC_005259.1 + 46884 0.67 0.254176
Target:  5'- cGCGcCGCCGCCCGCgaugagcgcccGCCGaGCAGUc -3'
miRNA:   3'- cCGC-GUGGCGGGCGac---------CGGCcCGUUA- -5'
23319 5' -64.9 NC_005259.1 + 52458 0.67 0.249324
Target:  5'- cGGCGgauggcagacCACCGCCCGCgaauacGUCGaGGCGGUc -3'
miRNA:   3'- -CCGC----------GUGGCGGGCGac----CGGC-CCGUUA- -5'
23319 5' -64.9 NC_005259.1 + 11425 0.67 0.239851
Target:  5'- cGGUGCaacggggaugcuuggGCCGCUCGCUGccGCCGGuGCc-- -3'
miRNA:   3'- -CCGCG---------------UGGCGGGCGAC--CGGCC-CGuua -5'
23319 5' -64.9 NC_005259.1 + 45747 0.67 0.236952
Target:  5'- cGCGCACCGCCucggggaugagcaCGCccucGCCGGGUg-- -3'
miRNA:   3'- cCGCGUGGCGG-------------GCGac--CGGCCCGuua -5'
23319 5' -64.9 NC_005259.1 + 5515 0.68 0.23181
Target:  5'- cGCGCGCCgcGCCCGCaaGCUGuGGCu-- -3'
miRNA:   3'- cCGCGUGG--CGGGCGacCGGC-CCGuua -5'
23319 5' -64.9 NC_005259.1 + 14969 0.68 0.222352
Target:  5'- aGGCGCauucaagGCCGCCggguacaagacacaGCaGGCCGGGUAc- -3'
miRNA:   3'- -CCGCG-------UGGCGGg-------------CGaCCGGCCCGUua -5'
23319 5' -64.9 NC_005259.1 + 55569 0.68 0.220718
Target:  5'- aGCGagcaggaacauCACCGCCgCGCUGGCCacGCGAUa -3'
miRNA:   3'- cCGC-----------GUGGCGG-GCGACCGGccCGUUA- -5'
23319 5' -64.9 NC_005259.1 + 36629 0.68 0.220718
Target:  5'- -cCGCGCCGCCCGCaaGGCCc-GCGAUc -3'
miRNA:   3'- ccGCGUGGCGGGCGa-CCGGccCGUUA- -5'
23319 5' -64.9 NC_005259.1 + 50100 0.68 0.220175
Target:  5'- uGGUGCGCCcgagguuGCCCGUacGCaCGGGCAc- -3'
miRNA:   3'- -CCGCGUGG-------CGGGCGacCG-GCCCGUua -5'
23319 5' -64.9 NC_005259.1 + 41402 0.68 0.219093
Target:  5'- uGGCGCGCCGCUCGg-GGUgcccacgaugugcaCGGGCc-- -3'
miRNA:   3'- -CCGCGUGGCGGGCgaCCG--------------GCCCGuua -5'
23319 5' -64.9 NC_005259.1 + 35637 0.68 0.215343
Target:  5'- gGGC-CGCCGCcgcugCCGCUGGCgaGGGUGGc -3'
miRNA:   3'- -CCGcGUGGCG-----GGCGACCGg-CCCGUUa -5'
23319 5' -64.9 NC_005259.1 + 46340 0.68 0.215343
Target:  5'- cGCGCACCGCuuGUagguucugGGCCGcgauGGCAc- -3'
miRNA:   3'- cCGCGUGGCGggCGa-------CCGGC----CCGUua -5'
23319 5' -64.9 NC_005259.1 + 68605 0.68 0.20493
Target:  5'- aGCGUcaaggaACCGCuuGUUGGCCagccGGGCAc- -3'
miRNA:   3'- cCGCG------UGGCGggCGACCGG----CCCGUua -5'
23319 5' -64.9 NC_005259.1 + 63853 0.69 0.194956
Target:  5'- cGCGUACCggcgaggugGCCgGCUGGCCuugcguGGGCGu- -3'
miRNA:   3'- cCGCGUGG---------CGGgCGACCGG------CCCGUua -5'
23319 5' -64.9 NC_005259.1 + 25077 0.69 0.194956
Target:  5'- uGGCGCugccACCG-CCGCUGcGCCcgccccgagcaaGGGCAAg -3'
miRNA:   3'- -CCGCG----UGGCgGGCGAC-CGG------------CCCGUUa -5'
23319 5' -64.9 NC_005259.1 + 30796 0.69 0.19013
Target:  5'- cGCGUACCGCCgGaacacCUGaGUCGGGUAGUc -3'
miRNA:   3'- cCGCGUGGCGGgC-----GAC-CGGCCCGUUA- -5'
23319 5' -64.9 NC_005259.1 + 44470 0.7 0.15518
Target:  5'- uGC-CGCCGCCC--UGGCCGGGCc-- -3'
miRNA:   3'- cCGcGUGGCGGGcgACCGGCCCGuua -5'
23319 5' -64.9 NC_005259.1 + 45615 0.7 0.1474
Target:  5'- cGGUcuCGauGCCCGCcgGGCCGGGCAGc -3'
miRNA:   3'- -CCGc-GUggCGGGCGa-CCGGCCCGUUa -5'
23319 5' -64.9 NC_005259.1 + 1373 0.71 0.143645
Target:  5'- cGcCGCGCCGCCCGCgaGGCCcGcGCAu- -3'
miRNA:   3'- cC-GCGUGGCGGGCGa-CCGGcC-CGUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.