miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2332 3' -57.6 NC_001416.1 + 1014 0.67 0.507131
Target:  5'- uUAUCUGGUU-GCCgacgGAUGGuGAUGcCGAg -3'
miRNA:   3'- -GUAGACCGAgCGGa---CUGCC-CUAC-GCU- -5'
2332 3' -57.6 NC_001416.1 + 4113 1.08 0.000533
Target:  5'- aCAUCUGGCUCGCCUGACGGGAUGCGAc -3'
miRNA:   3'- -GUAGACCGAGCGGACUGCCCUACGCU- -5'
2332 3' -57.6 NC_001416.1 + 12747 0.75 0.155442
Target:  5'- ---aUGGCUguacCGCCUGACGcGGAUGCGc -3'
miRNA:   3'- guagACCGA----GCGGACUGC-CCUACGCu -5'
2332 3' -57.6 NC_001416.1 + 21257 0.69 0.381241
Target:  5'- cCGUCUGGCUaCGuCCUGAUgcaGGGGcagGCGu -3'
miRNA:   3'- -GUAGACCGA-GC-GGACUG---CCCUa--CGCu -5'
2332 3' -57.6 NC_001416.1 + 30824 0.7 0.34195
Target:  5'- uGUCUGGCUuuuUuugauuucagaauuaGCCUGACGGGcaaugcUGCGAa -3'
miRNA:   3'- gUAGACCGA---G---------------CGGACUGCCCu-----ACGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.