miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2332 5' -56 NC_001416.1 + 4079 1.08 0.000824
Target:  5'- uCGCCGCCCCAUAAAGUACGCCCACGAc -3'
miRNA:   3'- -GCGGCGGGGUAUUUCAUGCGGGUGCU- -5'
2332 5' -56 NC_001416.1 + 13376 0.74 0.235718
Target:  5'- uGCCGCCaCuCAUAAGGcgGCGUCCACa- -3'
miRNA:   3'- gCGGCGG-G-GUAUUUCa-UGCGGGUGcu -5'
2332 5' -56 NC_001416.1 + 8325 0.73 0.285092
Target:  5'- aCGCUGCCCCuuuuuacgACGCCUGCGGc -3'
miRNA:   3'- -GCGGCGGGGuauuuca-UGCGGGUGCU- -5'
2332 5' -56 NC_001416.1 + 14504 0.69 0.483608
Target:  5'- gCGCCGCCCgGUGAGaUGCGgCaCACa- -3'
miRNA:   3'- -GCGGCGGGgUAUUUcAUGCgG-GUGcu -5'
2332 5' -56 NC_001416.1 + 14146 0.68 0.514753
Target:  5'- gCGCaCGCCCgGcGAuGUGCGCCaGCGGa -3'
miRNA:   3'- -GCG-GCGGGgUaUUuCAUGCGGgUGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.