miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23320 3' -56.4 NC_005259.1 + 2736 0.66 0.745724
Target:  5'- cCACCGauGCCgaggUCgCCG-UCGUGCa -3'
miRNA:   3'- uGUGGCggCGGaaa-AG-GGCaAGCGCG- -5'
23320 3' -56.4 NC_005259.1 + 53254 0.66 0.745724
Target:  5'- gACACCGUCGCCgccgcugUCgCCGgugC-CGCc -3'
miRNA:   3'- -UGUGGCGGCGGaaa----AG-GGCaa-GcGCG- -5'
23320 3' -56.4 NC_005259.1 + 18289 0.66 0.745724
Target:  5'- gACGCCcgacgaGCCGCCguucugCCCGgu-GUGCg -3'
miRNA:   3'- -UGUGG------CGGCGGaaaa--GGGCaagCGCG- -5'
23320 3' -56.4 NC_005259.1 + 45421 0.66 0.745724
Target:  5'- -gGCCGCCGCCgcugCCuCGUagGC-Cg -3'
miRNA:   3'- ugUGGCGGCGGaaaaGG-GCAagCGcG- -5'
23320 3' -56.4 NC_005259.1 + 3288 0.66 0.745724
Target:  5'- uCGCCGCCucGCCgg-UCCCucggcgaGCGCu -3'
miRNA:   3'- uGUGGCGG--CGGaaaAGGGcaag---CGCG- -5'
23320 3' -56.4 NC_005259.1 + 29398 0.66 0.745724
Target:  5'- uACACCGaggGCCUcggcgagCUCGUgCGCGCa -3'
miRNA:   3'- -UGUGGCgg-CGGAaaa----GGGCAaGCGCG- -5'
23320 3' -56.4 NC_005259.1 + 22523 0.66 0.745724
Target:  5'- cGCACCGUCGCCggugaUUUCCagcaGUccgaccUCGC-Cg -3'
miRNA:   3'- -UGUGGCGGCGGa----AAAGGg---CA------AGCGcG- -5'
23320 3' -56.4 NC_005259.1 + 12168 0.66 0.734512
Target:  5'- gGCACCGCCcucggucgaaccuGCCgga--CCGUggUCGUGUa -3'
miRNA:   3'- -UGUGGCGG-------------CGGaaaagGGCA--AGCGCG- -5'
23320 3' -56.4 NC_005259.1 + 11877 0.66 0.725251
Target:  5'- -gACCGCCGCaccgUCCCaaUCGC-Cg -3'
miRNA:   3'- ugUGGCGGCGgaaaAGGGcaAGCGcG- -5'
23320 3' -56.4 NC_005259.1 + 15382 0.66 0.725251
Target:  5'- -aGCUGCCGCaa----CCGUggcCGCGCa -3'
miRNA:   3'- ugUGGCGGCGgaaaagGGCAa--GCGCG- -5'
23320 3' -56.4 NC_005259.1 + 26063 0.66 0.725251
Target:  5'- cAUGCCGCCGCCgagcagUCCCccgaGgcCGcCGCc -3'
miRNA:   3'- -UGUGGCGGCGGaaa---AGGG----CaaGC-GCG- -5'
23320 3' -56.4 NC_005259.1 + 45643 0.66 0.725251
Target:  5'- cGCGCCgguGCCGCCgugaacacCgCCGUcCGCGUa -3'
miRNA:   3'- -UGUGG---CGGCGGaaaa----G-GGCAaGCGCG- -5'
23320 3' -56.4 NC_005259.1 + 18452 0.66 0.714877
Target:  5'- aACACCGCgcacacCGCCgg-UCCUGagcCGUGCc -3'
miRNA:   3'- -UGUGGCG------GCGGaaaAGGGCaa-GCGCG- -5'
23320 3' -56.4 NC_005259.1 + 26496 0.66 0.704426
Target:  5'- aACGCCGCgagcuCGCCg---CCCGgcgagaagaGCGCg -3'
miRNA:   3'- -UGUGGCG-----GCGGaaaaGGGCaag------CGCG- -5'
23320 3' -56.4 NC_005259.1 + 51507 0.66 0.704426
Target:  5'- gACGCCGCCGa----UCUCGa-CGCGCg -3'
miRNA:   3'- -UGUGGCGGCggaaaAGGGCaaGCGCG- -5'
23320 3' -56.4 NC_005259.1 + 36864 0.66 0.704426
Target:  5'- uGCGCCGuuGCUggca-CCGccCGCGCc -3'
miRNA:   3'- -UGUGGCggCGGaaaagGGCaaGCGCG- -5'
23320 3' -56.4 NC_005259.1 + 749 0.66 0.704426
Target:  5'- uACGCCGCCgguGCCUa--CCgCGUccacCGCGCc -3'
miRNA:   3'- -UGUGGCGG---CGGAaaaGG-GCAa---GCGCG- -5'
23320 3' -56.4 NC_005259.1 + 58706 0.67 0.693909
Target:  5'- uCGCCGCCGCCgucaccaUCgCCGggggugUCGUugGCa -3'
miRNA:   3'- uGUGGCGGCGGaaa----AG-GGCa-----AGCG--CG- -5'
23320 3' -56.4 NC_005259.1 + 9529 0.67 0.693909
Target:  5'- -gACCGCCGCCgggUCaCCGgagaGCuGCc -3'
miRNA:   3'- ugUGGCGGCGGaaaAG-GGCaag-CG-CG- -5'
23320 3' -56.4 NC_005259.1 + 43967 0.67 0.693909
Target:  5'- -gGCCGCCGCCUga--CCGa--GgGCg -3'
miRNA:   3'- ugUGGCGGCGGAaaagGGCaagCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.