Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23320 | 5' | -56.8 | NC_005259.1 | + | 7336 | 0.66 | 0.721688 |
Target: 5'- cGAGUACGUCGAG-GCCGGacaGACg--- -3' miRNA: 3'- -CUCGUGCAGCUUgUGGCCg--CUGacca -5' |
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23320 | 5' | -56.8 | NC_005259.1 | + | 62989 | 0.68 | 0.592976 |
Target: 5'- -cGCGCGUCGAcucgaugGCAUUGGCaGGCUGuGg -3' miRNA: 3'- cuCGUGCAGCU-------UGUGGCCG-CUGAC-Ca -5' |
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23320 | 5' | -56.8 | NC_005259.1 | + | 63670 | 0.68 | 0.594042 |
Target: 5'- cGGaCACcUCGGGCACCGGCGcGCcGGg -3' miRNA: 3'- cUC-GUGcAGCUUGUGGCCGC-UGaCCa -5' |
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23320 | 5' | -56.8 | NC_005259.1 | + | 42175 | 0.67 | 0.612214 |
Target: 5'- cAGCACGUCGAacuguauccgcugcGCGCCGucGCGA-UGGa -3' miRNA: 3'- cUCGUGCAGCU--------------UGUGGC--CGCUgACCa -5' |
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23320 | 5' | -56.8 | NC_005259.1 | + | 64027 | 0.67 | 0.615427 |
Target: 5'- aGGCGCGgCGAG-GCCGGUGACcGGa -3' miRNA: 3'- cUCGUGCaGCUUgUGGCCGCUGaCCa -5' |
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23320 | 5' | -56.8 | NC_005259.1 | + | 66456 | 0.67 | 0.615427 |
Target: 5'- -uGC-CGUCGAAC-UCGGUGacGCUGGUg -3' miRNA: 3'- cuCGuGCAGCUUGuGGCCGC--UGACCA- -5' |
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23320 | 5' | -56.8 | NC_005259.1 | + | 65984 | 0.67 | 0.626145 |
Target: 5'- aGGCGCGcCGAGCAgCCGcuCGACgUGGUg -3' miRNA: 3'- cUCGUGCaGCUUGU-GGCc-GCUG-ACCA- -5' |
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23320 | 5' | -56.8 | NC_005259.1 | + | 32878 | 0.67 | 0.636868 |
Target: 5'- -cGCGCGgugaUCGAuuCACCGGgGGCgagGGUg -3' miRNA: 3'- cuCGUGC----AGCUu-GUGGCCgCUGa--CCA- -5' |
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23320 | 5' | -56.8 | NC_005259.1 | + | 37076 | 0.67 | 0.647586 |
Target: 5'- --cCACGUCcacGCACCGGCGG-UGGUg -3' miRNA: 3'- cucGUGCAGcu-UGUGGCCGCUgACCA- -5' |
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23320 | 5' | -56.8 | NC_005259.1 | + | 48594 | 0.68 | 0.583392 |
Target: 5'- uGAGCuuGUCGAGCGCgGGCG-CUa-- -3' miRNA: 3'- -CUCGugCAGCUUGUGgCCGCuGAcca -5' |
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23320 | 5' | -56.8 | NC_005259.1 | + | 58965 | 0.68 | 0.562213 |
Target: 5'- cAGCAgGUCGGGCAgcucgUCGGCGAC-GGc -3' miRNA: 3'- cUCGUgCAGCUUGU-----GGCCGCUGaCCa -5' |
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23320 | 5' | -56.8 | NC_005259.1 | + | 39833 | 0.69 | 0.510318 |
Target: 5'- uGAGCGCGUUGG---UCGGCGACaGGa -3' miRNA: 3'- -CUCGUGCAGCUuguGGCCGCUGaCCa -5' |
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23320 | 5' | -56.8 | NC_005259.1 | + | 51669 | 0.79 | 0.123369 |
Target: 5'- cGGGCGCGUCGGGCACgGGCGcGCgaUGGUc -3' miRNA: 3'- -CUCGUGCAGCUUGUGgCCGC-UG--ACCA- -5' |
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23320 | 5' | -56.8 | NC_005259.1 | + | 57303 | 0.74 | 0.283702 |
Target: 5'- -uGCACGacaUCGAGCACCGGCggugucgGugUGGUc -3' miRNA: 3'- cuCGUGC---AGCUUGUGGCCG-------CugACCA- -5' |
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23320 | 5' | -56.8 | NC_005259.1 | + | 14155 | 0.72 | 0.344602 |
Target: 5'- cGAGCGCGUCGuguggaucuCGCCGGgCGGgUGGc -3' miRNA: 3'- -CUCGUGCAGCuu-------GUGGCC-GCUgACCa -5' |
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23320 | 5' | -56.8 | NC_005259.1 | + | 68784 | 0.71 | 0.422616 |
Target: 5'- uGAGCAgGUCGuACGCCGG-GGC-GGUg -3' miRNA: 3'- -CUCGUgCAGCuUGUGGCCgCUGaCCA- -5' |
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23320 | 5' | -56.8 | NC_005259.1 | + | 44026 | 0.7 | 0.43192 |
Target: 5'- cGAGCGCGgacUGAACACCGGCcuugacGACcGGc -3' miRNA: 3'- -CUCGUGCa--GCUUGUGGCCG------CUGaCCa -5' |
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23320 | 5' | -56.8 | NC_005259.1 | + | 19096 | 0.7 | 0.45088 |
Target: 5'- aAGCuGCG-CGAACucACCGGCG-CUGGUg -3' miRNA: 3'- cUCG-UGCaGCUUG--UGGCCGCuGACCA- -5' |
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23320 | 5' | -56.8 | NC_005259.1 | + | 50985 | 0.69 | 0.500171 |
Target: 5'- cGAGCgguGUCGAGuCACCGGCGAaaaaccggacgUUGGUc -3' miRNA: 3'- -CUCGug-CAGCUU-GUGGCCGCU-----------GACCA- -5' |
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23320 | 5' | -56.8 | NC_005259.1 | + | 67445 | 0.69 | 0.500171 |
Target: 5'- uGAGCGCGUCGGGgAugcccuuuUCGGCGAUggcgGGg -3' miRNA: 3'- -CUCGUGCAGCUUgU--------GGCCGCUGa---CCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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