Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 23321 | 3' | -50.7 | NC_005259.1 | + | 5544 | 0.66 | 0.963185 |
|
Target: 5'- uCUCGcccgaGGCCGcgUGGGGUggUGACg -3' miRNA: 3'- -GAGCuaca-CCGGCaaACCCCA--AUUGg -5' |
|||||||
| 23321 | 3' | -50.7 | NC_005259.1 | + | 67224 | 0.66 | 0.950991 |
|
Target: 5'- gUCGAUGccgaccacGGCgGUguaGGGGUUGAgCg -3' miRNA: 3'- gAGCUACa-------CCGgCAaa-CCCCAAUUgG- -5' |
|||||||
| 23321 | 3' | -50.7 | NC_005259.1 | + | 26017 | 0.66 | 0.946389 |
|
Target: 5'- -gCGGgaUGGCCGcaaGcGGGUUGGCCa -3' miRNA: 3'- gaGCUacACCGGCaaaC-CCCAAUUGG- -5' |
|||||||
| 23321 | 3' | -50.7 | NC_005259.1 | + | 60422 | 0.67 | 0.941512 |
|
Target: 5'- gCUCGGggGUGGCCcac-GGGGc-GGCCa -3' miRNA: 3'- -GAGCUa-CACCGGcaaaCCCCaaUUGG- -5' |
|||||||
| 23321 | 3' | -50.7 | NC_005259.1 | + | 38673 | 0.69 | 0.852927 |
|
Target: 5'- cCUCGcUGuUGGCCGccgGGucgaGGUUGGCCa -3' miRNA: 3'- -GAGCuAC-ACCGGCaaaCC----CCAAUUGG- -5' |
|||||||
| 23321 | 3' | -50.7 | NC_005259.1 | + | 61594 | 0.69 | 0.852927 |
|
Target: 5'- -gCGGUG-GGCCGg-UGGGGUcGGCg -3' miRNA: 3'- gaGCUACaCCGGCaaACCCCAaUUGg -5' |
|||||||
| 23321 | 3' | -50.7 | NC_005259.1 | + | 10486 | 0.7 | 0.835433 |
|
Target: 5'- uCUUGGggucGUGGuuG-UUGGGGUUGuCCg -3' miRNA: 3'- -GAGCUa---CACCggCaAACCCCAAUuGG- -5' |
|||||||
| 23321 | 3' | -50.7 | NC_005259.1 | + | 59872 | 0.72 | 0.682383 |
|
Target: 5'- gCUCGuUGUGGCCGaaaccGGGGgcGACg -3' miRNA: 3'- -GAGCuACACCGGCaaa--CCCCaaUUGg -5' |
|||||||
| 23321 | 3' | -50.7 | NC_005259.1 | + | 16676 | 0.74 | 0.615865 |
|
Target: 5'- cCUCGAUGUGGUCGgcgauccUGGGcaccgaggUGACCg -3' miRNA: 3'- -GAGCUACACCGGCaa-----ACCCca------AUUGG- -5' |
|||||||
| 23321 | 3' | -50.7 | NC_005259.1 | + | 11617 | 1.14 | 0.002074 |
|
Target: 5'- gCUCGAUGUGGCCGUUUGGGGUUAACCa -3' miRNA: 3'- -GAGCUACACCGGCAAACCCCAAUUGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home