miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23321 5' -52 NC_005259.1 + 40572 0.66 0.922033
Target:  5'- --cGGUGuUGCUGUcGGCGGCucgcaccagCACAUCGu -3'
miRNA:   3'- guuCUAU-AUGGCA-CCGCCG---------GUGUAGC- -5'
23321 5' -52 NC_005259.1 + 60426 0.66 0.922033
Target:  5'- gGGGGUGgcCCacggGGCGGCCACGcccgacaccUCGa -3'
miRNA:   3'- gUUCUAUauGGca--CCGCCGGUGU---------AGC- -5'
23321 5' -52 NC_005259.1 + 8361 0.66 0.915896
Target:  5'- --cGGUAUcGCuCGgcGGCGGCCucgGCAUCGg -3'
miRNA:   3'- guuCUAUA-UG-GCa-CCGCCGG---UGUAGC- -5'
23321 5' -52 NC_005259.1 + 11029 0.66 0.90948
Target:  5'- gCAGGAguucGCCG-GGUGGUCACcgCa -3'
miRNA:   3'- -GUUCUaua-UGGCaCCGCCGGUGuaGc -5'
23321 5' -52 NC_005259.1 + 5713 0.66 0.90948
Target:  5'- cCAAGGccagcGCCGgacGGCGGCCAUucUCGc -3'
miRNA:   3'- -GUUCUaua--UGGCa--CCGCCGGUGu-AGC- -5'
23321 5' -52 NC_005259.1 + 41668 0.66 0.90948
Target:  5'- gCGGGAUcUGCaccgCGUGcGUGGCCACcgCGc -3'
miRNA:   3'- -GUUCUAuAUG----GCAC-CGCCGGUGuaGC- -5'
23321 5' -52 NC_005259.1 + 33313 0.66 0.902787
Target:  5'- --cGAUcccGCCGUcGGCGGUCACG-CGg -3'
miRNA:   3'- guuCUAua-UGGCA-CCGCCGGUGUaGC- -5'
23321 5' -52 NC_005259.1 + 12079 0.66 0.89582
Target:  5'- cCGAGAUGggcACCuUGGUGGUCACGa-- -3'
miRNA:   3'- -GUUCUAUa--UGGcACCGCCGGUGUagc -5'
23321 5' -52 NC_005259.1 + 51353 0.67 0.88108
Target:  5'- -cGGAUAUGCCcgGUGGCaccGGCaCACcgCGc -3'
miRNA:   3'- guUCUAUAUGG--CACCG---CCG-GUGuaGC- -5'
23321 5' -52 NC_005259.1 + 68573 0.68 0.839807
Target:  5'- cCGAGGUGgACCucGUauccGGCGGCCACcgCa -3'
miRNA:   3'- -GUUCUAUaUGG--CA----CCGCCGGUGuaGc -5'
23321 5' -52 NC_005259.1 + 43182 0.68 0.821688
Target:  5'- gAAGucgGUACCGaccucGGCGGCgAUGUCGa -3'
miRNA:   3'- gUUCua-UAUGGCa----CCGCCGgUGUAGC- -5'
23321 5' -52 NC_005259.1 + 56369 0.69 0.783108
Target:  5'- --cGGUAcaGCCGUcGCgGGCCGCGUCGg -3'
miRNA:   3'- guuCUAUa-UGGCAcCG-CCGGUGUAGC- -5'
23321 5' -52 NC_005259.1 + 20057 0.69 0.773037
Target:  5'- --cGAUGUccgcuGCgGUGGCGGucgucaCCACGUCGa -3'
miRNA:   3'- guuCUAUA-----UGgCACCGCC------GGUGUAGC- -5'
23321 5' -52 NC_005259.1 + 15988 0.69 0.773037
Target:  5'- uCGAGugaucACCGccGGUGGCCGCAUCc -3'
miRNA:   3'- -GUUCuaua-UGGCa-CCGCCGGUGUAGc -5'
23321 5' -52 NC_005259.1 + 65339 0.7 0.741985
Target:  5'- --cGAgcUGCUGUGcGCGGgCACGUCGc -3'
miRNA:   3'- guuCUauAUGGCAC-CGCCgGUGUAGC- -5'
23321 5' -52 NC_005259.1 + 28326 0.7 0.720701
Target:  5'- --cGGUGUGCCGUccuuGGCGGCgAaAUCGa -3'
miRNA:   3'- guuCUAUAUGGCA----CCGCCGgUgUAGC- -5'
23321 5' -52 NC_005259.1 + 60281 0.71 0.666132
Target:  5'- ------cUGCCG-GGCGGCCAuCGUCGu -3'
miRNA:   3'- guucuauAUGGCaCCGCCGGU-GUAGC- -5'
23321 5' -52 NC_005259.1 + 61038 0.75 0.450359
Target:  5'- gCGAGGUcgACCGacgGGCGGCUcaccuugugccggGCAUCGg -3'
miRNA:   3'- -GUUCUAuaUGGCa--CCGCCGG-------------UGUAGC- -5'
23321 5' -52 NC_005259.1 + 62551 0.76 0.394058
Target:  5'- aGAGAUAgccucACCGggcaGCGGCCACAUCa -3'
miRNA:   3'- gUUCUAUa----UGGCac--CGCCGGUGUAGc -5'
23321 5' -52 NC_005259.1 + 51162 0.77 0.341691
Target:  5'- -cGGGUugACCGUGGCGaGCCACAgaUCGa -3'
miRNA:   3'- guUCUAuaUGGCACCGC-CGGUGU--AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.