miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23322 3' -56.6 NC_005259.1 + 4002 0.67 0.671412
Target:  5'- cGGGcCGCGUCCcCCGgUUGAGCAGa-- -3'
miRNA:   3'- -CCU-GUGCGGGuGGCgGACUCGUUacc -5'
23322 3' -56.6 NC_005259.1 + 4427 0.71 0.454069
Target:  5'- -cGCGCGCCCgaggucgaGCCGCCcGuGCgAGUGGg -3'
miRNA:   3'- ccUGUGCGGG--------UGGCGGaCuCG-UUACC- -5'
23322 3' -56.6 NC_005259.1 + 5434 0.7 0.500258
Target:  5'- aGGucuGCGCCCGCUGCCgccgacagaucgcaUGAGCAgcaccaAUGGc -3'
miRNA:   3'- -CCug-UGCGGGUGGCGG--------------ACUCGU------UACC- -5'
23322 3' -56.6 NC_005259.1 + 7746 0.75 0.235612
Target:  5'- aGGACGCGgUCACCGUCUGAGaCAAc-- -3'
miRNA:   3'- -CCUGUGCgGGUGGCGGACUC-GUUacc -5'
23322 3' -56.6 NC_005259.1 + 8878 0.7 0.463708
Target:  5'- -cGCAC-CCaCGCCGCCUGAGCGu--- -3'
miRNA:   3'- ccUGUGcGG-GUGGCGGACUCGUuacc -5'
23322 3' -56.6 NC_005259.1 + 10832 1.12 0.000703
Target:  5'- uGGACACGCCCACCGCCUGAGCAAUGGu -3'
miRNA:   3'- -CCUGUGCGGGUGGCGGACUCGUUACC- -5'
23322 3' -56.6 NC_005259.1 + 12218 0.75 0.254057
Target:  5'- cGGcGCAcCGCCCGCUgGCC-GGGCAAUGGu -3'
miRNA:   3'- -CC-UGU-GCGGGUGG-CGGaCUCGUUACC- -5'
23322 3' -56.6 NC_005259.1 + 14178 0.66 0.734067
Target:  5'- cGGGCGgguggcaacCGCUCACC-CCcGAGCAGgccgGGa -3'
miRNA:   3'- -CCUGU---------GCGGGUGGcGGaCUCGUUa---CC- -5'
23322 3' -56.6 NC_005259.1 + 16194 0.71 0.407588
Target:  5'- aGAuCAUGUCCAccCCGCCUGAGUuccugaucaGGUGGg -3'
miRNA:   3'- cCU-GUGCGGGU--GGCGGACUCG---------UUACC- -5'
23322 3' -56.6 NC_005259.1 + 16408 0.68 0.607485
Target:  5'- gGGACGCaGCCCACCGaggugcCCgucGAGCGGc-- -3'
miRNA:   3'- -CCUGUG-CGGGUGGC------GGa--CUCGUUacc -5'
23322 3' -56.6 NC_005259.1 + 20172 0.71 0.416646
Target:  5'- --cCGCGCCCGCCGCCUcGGCu---- -3'
miRNA:   3'- ccuGUGCGGGUGGCGGAcUCGuuacc -5'
23322 3' -56.6 NC_005259.1 + 20257 0.67 0.682
Target:  5'- cGACACGCCg--CGCC-GGGcCGAUGGa -3'
miRNA:   3'- cCUGUGCGGgugGCGGaCUC-GUUACC- -5'
23322 3' -56.6 NC_005259.1 + 23219 0.66 0.713456
Target:  5'- aGGACGgguacCGUCCGCucgaCGCCaaugccaccucgUGGGCGGUGGc -3'
miRNA:   3'- -CCUGU-----GCGGGUG----GCGG------------ACUCGUUACC- -5'
23322 3' -56.6 NC_005259.1 + 25074 0.72 0.359214
Target:  5'- gGGugGCGCugCCACCGCCgcugcgcccgccccGAGCAA-GGg -3'
miRNA:   3'- -CCugUGCG--GGUGGCGGa-------------CUCGUUaCC- -5'
23322 3' -56.6 NC_005259.1 + 26054 0.68 0.628807
Target:  5'- cGGGUugGCCaUGCCGCCgccGAGCAGUc- -3'
miRNA:   3'- -CCUGugCGG-GUGGCGGa--CUCGUUAcc -5'
23322 3' -56.6 NC_005259.1 + 26790 0.66 0.712417
Target:  5'- cGGaACACcaGCgCCGCCGCCcGguuggccgguaccGGCGGUGGu -3'
miRNA:   3'- -CC-UGUG--CG-GGUGGCGGaC-------------UCGUUACC- -5'
23322 3' -56.6 NC_005259.1 + 30012 0.76 0.223949
Target:  5'- cGACAaggUGaCCACCGCCgGGGCGGUGGg -3'
miRNA:   3'- cCUGU---GCgGGUGGCGGaCUCGUUACC- -5'
23322 3' -56.6 NC_005259.1 + 30362 0.67 0.671412
Target:  5'- uGGACGCcgaucuGCCCGCUGCCcG-GCGAgaaaccGGg -3'
miRNA:   3'- -CCUGUG------CGGGUGGCGGaCuCGUUa-----CC- -5'
23322 3' -56.6 NC_005259.1 + 31244 0.7 0.503278
Target:  5'- uGGGCGCGgcggugccgcCCCACaCGCCgcaguaGGCGGUGGc -3'
miRNA:   3'- -CCUGUGC----------GGGUG-GCGGac----UCGUUACC- -5'
23322 3' -56.6 NC_005259.1 + 31735 0.68 0.596849
Target:  5'- uGAcCGCGCCUGCCGC--GAGCGcUGGu -3'
miRNA:   3'- cCU-GUGCGGGUGGCGgaCUCGUuACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.