Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23322 | 3' | -56.6 | NC_005259.1 | + | 32380 | 0.69 | 0.554666 |
Target: 5'- cGGGCACuGCCCGCCGUCgcgauAGCuc-GGc -3' miRNA: 3'- -CCUGUG-CGGGUGGCGGac---UCGuuaCC- -5' |
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23322 | 3' | -56.6 | NC_005259.1 | + | 55346 | 0.69 | 0.513403 |
Target: 5'- cGGugGCGaugCCgaaCGCCUGAGCGAcGGc -3' miRNA: 3'- -CCugUGCg--GGug-GCGGACUCGUUaCC- -5' |
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23322 | 3' | -56.6 | NC_005259.1 | + | 64681 | 0.69 | 0.513403 |
Target: 5'- -aGCAcCGCCgCGCCGCC-GAGCGAUa- -3' miRNA: 3'- ccUGU-GCGG-GUGGCGGaCUCGUUAcc -5' |
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23322 | 3' | -56.6 | NC_005259.1 | + | 31244 | 0.7 | 0.503278 |
Target: 5'- uGGGCGCGgcggugccgcCCCACaCGCCgcaguaGGCGGUGGc -3' miRNA: 3'- -CCUGUGC----------GGGUG-GCGGac----UCGUUACC- -5' |
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23322 | 3' | -56.6 | NC_005259.1 | + | 5434 | 0.7 | 0.500258 |
Target: 5'- aGGucuGCGCCCGCUGCCgccgacagaucgcaUGAGCAgcaccaAUGGc -3' miRNA: 3'- -CCug-UGCGGGUGGCGG--------------ACUCGU------UACC- -5' |
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23322 | 3' | -56.6 | NC_005259.1 | + | 43895 | 0.7 | 0.483298 |
Target: 5'- cGACAuUGCCCgcGCCGgCUGAuCGAUGGg -3' miRNA: 3'- cCUGU-GCGGG--UGGCgGACUcGUUACC- -5' |
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23322 | 3' | -56.6 | NC_005259.1 | + | 8878 | 0.7 | 0.463708 |
Target: 5'- -cGCAC-CCaCGCCGCCUGAGCGu--- -3' miRNA: 3'- ccUGUGcGG-GUGGCGGACUCGUuacc -5' |
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23322 | 3' | -56.6 | NC_005259.1 | + | 4427 | 0.71 | 0.454069 |
Target: 5'- -cGCGCGCCCgaggucgaGCCGCCcGuGCgAGUGGg -3' miRNA: 3'- ccUGUGCGGG--------UGGCGGaCuCG-UUACC- -5' |
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23322 | 3' | -56.6 | NC_005259.1 | + | 20172 | 0.71 | 0.416646 |
Target: 5'- --cCGCGCCCGCCGCCUcGGCu---- -3' miRNA: 3'- ccuGUGCGGGUGGCGGAcUCGuuacc -5' |
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23322 | 3' | -56.6 | NC_005259.1 | + | 16194 | 0.71 | 0.407588 |
Target: 5'- aGAuCAUGUCCAccCCGCCUGAGUuccugaucaGGUGGg -3' miRNA: 3'- cCU-GUGCGGGU--GGCGGACUCG---------UUACC- -5' |
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23322 | 3' | -56.6 | NC_005259.1 | + | 25074 | 0.72 | 0.359214 |
Target: 5'- gGGugGCGCugCCACCGCCgcugcgcccgccccGAGCAA-GGg -3' miRNA: 3'- -CCugUGCG--GGUGGCGGa-------------CUCGUUaCC- -5' |
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23322 | 3' | -56.6 | NC_005259.1 | + | 48051 | 0.75 | 0.267002 |
Target: 5'- cGGugGCcacggcggguaGCgCCGCCGCgccCUGAGCGAUGGu -3' miRNA: 3'- -CCugUG-----------CG-GGUGGCG---GACUCGUUACC- -5' |
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23322 | 3' | -56.6 | NC_005259.1 | + | 43960 | 0.75 | 0.254057 |
Target: 5'- uGGGCGgGgCCGCCGCCUGAccgaggGCGGUGc -3' miRNA: 3'- -CCUGUgCgGGUGGCGGACU------CGUUACc -5' |
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23322 | 3' | -56.6 | NC_005259.1 | + | 12218 | 0.75 | 0.254057 |
Target: 5'- cGGcGCAcCGCCCGCUgGCC-GGGCAAUGGu -3' miRNA: 3'- -CC-UGU-GCGGGUGG-CGGaCUCGUUACC- -5' |
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23322 | 3' | -56.6 | NC_005259.1 | + | 43316 | 0.75 | 0.235612 |
Target: 5'- uGGCuGCGUuggCCACCGCCUuGGCGAUGGg -3' miRNA: 3'- cCUG-UGCG---GGUGGCGGAcUCGUUACC- -5' |
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23322 | 3' | -56.6 | NC_005259.1 | + | 7746 | 0.75 | 0.235612 |
Target: 5'- aGGACGCGgUCACCGUCUGAGaCAAc-- -3' miRNA: 3'- -CCUGUGCgGGUGGCGGACUC-GUUacc -5' |
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23322 | 3' | -56.6 | NC_005259.1 | + | 30012 | 0.76 | 0.223949 |
Target: 5'- cGACAaggUGaCCACCGCCgGGGCGGUGGg -3' miRNA: 3'- cCUGU---GCgGGUGGCGGaCUCGUUACC- -5' |
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23322 | 3' | -56.6 | NC_005259.1 | + | 10832 | 1.12 | 0.000703 |
Target: 5'- uGGACACGCCCACCGCCUGAGCAAUGGu -3' miRNA: 3'- -CCUGUGCGGGUGGCGGACUCGUUACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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