miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23324 3' -54 NC_005259.1 + 1331 0.67 0.788303
Target:  5'- gUCGAuuUCGAGAUCGaGCGCAaCGGUg -3'
miRNA:   3'- -GGCUcgAGUUCUGGCaCGCGUaGUCG- -5'
23324 3' -54 NC_005259.1 + 33391 0.67 0.787331
Target:  5'- gCCGAGCgcgaCGAG-CCGUguccaccGCGCGUacgccuccCAGCg -3'
miRNA:   3'- -GGCUCGa---GUUCuGGCA-------CGCGUA--------GUCG- -5'
23324 3' -54 NC_005259.1 + 49557 0.67 0.782445
Target:  5'- gCCGGGCUguucgucggucguggCcAGACCGgcggGCGgGgUCAGCa -3'
miRNA:   3'- -GGCUCGA---------------GuUCUGGCa---CGCgU-AGUCG- -5'
23324 3' -54 NC_005259.1 + 19202 0.67 0.782445
Target:  5'- gCGAGCUCGuGGugCGggcgGCGacgugggacaccgaGUCGGCg -3'
miRNA:   3'- gGCUCGAGU-UCugGCa---CGCg-------------UAGUCG- -5'
23324 3' -54 NC_005259.1 + 45972 0.67 0.778508
Target:  5'- gCCGAGCUuggCGAGugUGUccGCGUacAUCuGCg -3'
miRNA:   3'- -GGCUCGA---GUUCugGCA--CGCG--UAGuCG- -5'
23324 3' -54 NC_005259.1 + 658 0.68 0.758485
Target:  5'- aCGuGCUCGAGggcauGCUGUG-GC-UCAGCa -3'
miRNA:   3'- gGCuCGAGUUC-----UGGCACgCGuAGUCG- -5'
23324 3' -54 NC_005259.1 + 29471 0.68 0.758485
Target:  5'- cCCG-GCUCGgcauGGACCGccGUGacUAUCAGCa -3'
miRNA:   3'- -GGCuCGAGU----UCUGGCa-CGC--GUAGUCG- -5'
23324 3' -54 NC_005259.1 + 68692 0.68 0.758485
Target:  5'- cUCGAugaUCGAGGCgGgcaGCGCGUCGGUg -3'
miRNA:   3'- -GGCUcg-AGUUCUGgCa--CGCGUAGUCG- -5'
23324 3' -54 NC_005259.1 + 67256 0.68 0.748279
Target:  5'- gCgGGGcCUCGGGcaGCCGUGuCGCGUCAa- -3'
miRNA:   3'- -GgCUC-GAGUUC--UGGCAC-GCGUAGUcg -5'
23324 3' -54 NC_005259.1 + 1552 0.68 0.737958
Target:  5'- gCCGcGUUCGGGGCgGUGaCGCuGUgAGCg -3'
miRNA:   3'- -GGCuCGAGUUCUGgCAC-GCG-UAgUCG- -5'
23324 3' -54 NC_005259.1 + 17778 0.68 0.737958
Target:  5'- gCCGAGCgCAccGAgCGUGCGCAccgcgaUAGCg -3'
miRNA:   3'- -GGCUCGaGUu-CUgGCACGCGUa-----GUCG- -5'
23324 3' -54 NC_005259.1 + 23284 0.68 0.73484
Target:  5'- aCCGGGCgcggugguuggguaUCGGGGuCCG-GCGCgGUCGGUg -3'
miRNA:   3'- -GGCUCG--------------AGUUCU-GGCaCGCG-UAGUCG- -5'
23324 3' -54 NC_005259.1 + 2183 0.68 0.73484
Target:  5'- gCCGAGgUCAuGGGCCGcuacggcaaggugcUGCGCAcCgAGCg -3'
miRNA:   3'- -GGCUCgAGU-UCUGGC--------------ACGCGUaG-UCG- -5'
23324 3' -54 NC_005259.1 + 63714 0.68 0.727532
Target:  5'- gCGGGgaUCGGGGCC-UGCGCAgccggUAGCg -3'
miRNA:   3'- gGCUCg-AGUUCUGGcACGCGUa----GUCG- -5'
23324 3' -54 NC_005259.1 + 39576 0.68 0.726484
Target:  5'- cCCGAccucgaugcuguuGCUguGGAUCGUGUGgguggugcCAUCAGCg -3'
miRNA:   3'- -GGCU-------------CGAguUCUGGCACGC--------GUAGUCG- -5'
23324 3' -54 NC_005259.1 + 7334 0.69 0.706413
Target:  5'- gCCGAGUacgUCGAGGCCGgacagacguucgUGCuGUggCAGCa -3'
miRNA:   3'- -GGCUCG---AGUUCUGGC------------ACG-CGuaGUCG- -5'
23324 3' -54 NC_005259.1 + 11237 0.69 0.695742
Target:  5'- cUCGGGCUCGGGcAUCGcGCGCAccacgUgGGCu -3'
miRNA:   3'- -GGCUCGAGUUC-UGGCaCGCGU-----AgUCG- -5'
23324 3' -54 NC_005259.1 + 14545 0.69 0.695742
Target:  5'- gCCGAGUUCGuccggcAGGCCGaGCGgGgacCGGCg -3'
miRNA:   3'- -GGCUCGAGU------UCUGGCaCGCgUa--GUCG- -5'
23324 3' -54 NC_005259.1 + 33909 0.69 0.695742
Target:  5'- aCGGGC-CGAGACCGgccacgGUGCG--AGCa -3'
miRNA:   3'- gGCUCGaGUUCUGGCa-----CGCGUagUCG- -5'
23324 3' -54 NC_005259.1 + 8069 0.69 0.68501
Target:  5'- gCCGAcaUCGAGAUCGUGCcGCGcUGGCg -3'
miRNA:   3'- -GGCUcgAGUUCUGGCACG-CGUaGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.