Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23325 | 3' | -48.5 | NC_005259.1 | + | 10497 | 0.66 | 0.990229 |
Target: 5'- uGGUUGUUGgGGUUGuccgGCACGggccaGCu -3' miRNA: 3'- -CCAGUAACgCCAACu---UGUGCaacg-CG- -5' |
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23325 | 3' | -48.5 | NC_005259.1 | + | 20509 | 0.66 | 0.988764 |
Target: 5'- -aUCGgcGaCGGUgucccGAGCACGggUGCGCu -3' miRNA: 3'- ccAGUaaC-GCCAa----CUUGUGCa-ACGCG- -5' |
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23325 | 3' | -48.5 | NC_005259.1 | + | 49859 | 0.67 | 0.978734 |
Target: 5'- aGGaUCGU--UGGUcacGACGCGUUGCGCc -3' miRNA: 3'- -CC-AGUAacGCCAac-UUGUGCAACGCG- -5' |
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23325 | 3' | -48.5 | NC_005259.1 | + | 62839 | 0.67 | 0.976112 |
Target: 5'- aGGUCGagcgcGCGGUUGAcgaGCAgcCGcucgGCGCg -3' miRNA: 3'- -CCAGUaa---CGCCAACU---UGU--GCaa--CGCG- -5' |
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23325 | 3' | -48.5 | NC_005259.1 | + | 33776 | 0.68 | 0.970171 |
Target: 5'- cGGUCAUcacUGuuGUUGAAcCACGUgagGuCGCc -3' miRNA: 3'- -CCAGUA---ACgcCAACUU-GUGCAa--C-GCG- -5' |
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23325 | 3' | -48.5 | NC_005259.1 | + | 57248 | 0.68 | 0.963241 |
Target: 5'- cGUCGUUGcCGG--GAACAgucCGUUGgGCg -3' miRNA: 3'- cCAGUAAC-GCCaaCUUGU---GCAACgCG- -5' |
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23325 | 3' | -48.5 | NC_005259.1 | + | 11510 | 0.68 | 0.958582 |
Target: 5'- aGGUCAggccauccucgGCGGcagcgaucUUGAGC-CGUUGcCGCa -3' miRNA: 3'- -CCAGUaa---------CGCC--------AACUUGuGCAAC-GCG- -5' |
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23325 | 3' | -48.5 | NC_005259.1 | + | 51138 | 0.69 | 0.941216 |
Target: 5'- cGUCGggGCGGccaUGAGCGCGUUcGgGUu -3' miRNA: 3'- cCAGUaaCGCCa--ACUUGUGCAA-CgCG- -5' |
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23325 | 3' | -48.5 | NC_005259.1 | + | 45189 | 0.69 | 0.941216 |
Target: 5'- aGGUCAgcGCGG-UGAugACGg-GCGa -3' miRNA: 3'- -CCAGUaaCGCCaACUugUGCaaCGCg -5' |
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23325 | 3' | -48.5 | NC_005259.1 | + | 51254 | 0.69 | 0.935964 |
Target: 5'- cGcCGUUGCGGcucgcggUGGuCACGgUGCGCg -3' miRNA: 3'- cCaGUAACGCCa------ACUuGUGCaACGCG- -5' |
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23325 | 3' | -48.5 | NC_005259.1 | + | 58553 | 0.7 | 0.924593 |
Target: 5'- aGGUUAcggcucggGCGGUUGGGC-CGgaucgcgGCGCg -3' miRNA: 3'- -CCAGUaa------CGCCAACUUGuGCaa-----CGCG- -5' |
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23325 | 3' | -48.5 | NC_005259.1 | + | 67933 | 0.7 | 0.912061 |
Target: 5'- aGGUCGcgaggaugaucUUGCGGU---GCGgGUUGUGCu -3' miRNA: 3'- -CCAGU-----------AACGCCAacuUGUgCAACGCG- -5' |
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23325 | 3' | -48.5 | NC_005259.1 | + | 42885 | 0.71 | 0.883577 |
Target: 5'- cGGUCucggUGgGGUUGAGCACGa---GCu -3' miRNA: 3'- -CCAGua--ACgCCAACUUGUGCaacgCG- -5' |
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23325 | 3' | -48.5 | NC_005259.1 | + | 28015 | 0.71 | 0.859359 |
Target: 5'- gGGUCGccGgGGUUGcGCGCGUUG-GCc -3' miRNA: 3'- -CCAGUaaCgCCAACuUGUGCAACgCG- -5' |
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23325 | 3' | -48.5 | NC_005259.1 | + | 56170 | 0.72 | 0.850778 |
Target: 5'- -cUCGUUGgccaCGGUgccGAcauACGCGUUGCGCg -3' miRNA: 3'- ccAGUAAC----GCCAa--CU---UGUGCAACGCG- -5' |
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23325 | 3' | -48.5 | NC_005259.1 | + | 51634 | 0.73 | 0.794575 |
Target: 5'- aGGUCGUcggaGCGGUaggcGAACGgGUUGcCGCg -3' miRNA: 3'- -CCAGUAa---CGCCAa---CUUGUgCAAC-GCG- -5' |
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23325 | 3' | -48.5 | NC_005259.1 | + | 9925 | 1.15 | 0.003229 |
Target: 5'- uGGUCAUUGCGGUUGAACACGUUGCGCc -3' miRNA: 3'- -CCAGUAACGCCAACUUGUGCAACGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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