miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23325 3' -48.5 NC_005259.1 + 10497 0.66 0.990229
Target:  5'- uGGUUGUUGgGGUUGuccgGCACGggccaGCu -3'
miRNA:   3'- -CCAGUAACgCCAACu---UGUGCaacg-CG- -5'
23325 3' -48.5 NC_005259.1 + 20509 0.66 0.988764
Target:  5'- -aUCGgcGaCGGUgucccGAGCACGggUGCGCu -3'
miRNA:   3'- ccAGUaaC-GCCAa----CUUGUGCa-ACGCG- -5'
23325 3' -48.5 NC_005259.1 + 49859 0.67 0.978734
Target:  5'- aGGaUCGU--UGGUcacGACGCGUUGCGCc -3'
miRNA:   3'- -CC-AGUAacGCCAac-UUGUGCAACGCG- -5'
23325 3' -48.5 NC_005259.1 + 62839 0.67 0.976112
Target:  5'- aGGUCGagcgcGCGGUUGAcgaGCAgcCGcucgGCGCg -3'
miRNA:   3'- -CCAGUaa---CGCCAACU---UGU--GCaa--CGCG- -5'
23325 3' -48.5 NC_005259.1 + 33776 0.68 0.970171
Target:  5'- cGGUCAUcacUGuuGUUGAAcCACGUgagGuCGCc -3'
miRNA:   3'- -CCAGUA---ACgcCAACUU-GUGCAa--C-GCG- -5'
23325 3' -48.5 NC_005259.1 + 57248 0.68 0.963241
Target:  5'- cGUCGUUGcCGG--GAACAgucCGUUGgGCg -3'
miRNA:   3'- cCAGUAAC-GCCaaCUUGU---GCAACgCG- -5'
23325 3' -48.5 NC_005259.1 + 11510 0.68 0.958582
Target:  5'- aGGUCAggccauccucgGCGGcagcgaucUUGAGC-CGUUGcCGCa -3'
miRNA:   3'- -CCAGUaa---------CGCC--------AACUUGuGCAAC-GCG- -5'
23325 3' -48.5 NC_005259.1 + 51138 0.69 0.941216
Target:  5'- cGUCGggGCGGccaUGAGCGCGUUcGgGUu -3'
miRNA:   3'- cCAGUaaCGCCa--ACUUGUGCAA-CgCG- -5'
23325 3' -48.5 NC_005259.1 + 45189 0.69 0.941216
Target:  5'- aGGUCAgcGCGG-UGAugACGg-GCGa -3'
miRNA:   3'- -CCAGUaaCGCCaACUugUGCaaCGCg -5'
23325 3' -48.5 NC_005259.1 + 51254 0.69 0.935964
Target:  5'- cGcCGUUGCGGcucgcggUGGuCACGgUGCGCg -3'
miRNA:   3'- cCaGUAACGCCa------ACUuGUGCaACGCG- -5'
23325 3' -48.5 NC_005259.1 + 58553 0.7 0.924593
Target:  5'- aGGUUAcggcucggGCGGUUGGGC-CGgaucgcgGCGCg -3'
miRNA:   3'- -CCAGUaa------CGCCAACUUGuGCaa-----CGCG- -5'
23325 3' -48.5 NC_005259.1 + 67933 0.7 0.912061
Target:  5'- aGGUCGcgaggaugaucUUGCGGU---GCGgGUUGUGCu -3'
miRNA:   3'- -CCAGU-----------AACGCCAacuUGUgCAACGCG- -5'
23325 3' -48.5 NC_005259.1 + 42885 0.71 0.883577
Target:  5'- cGGUCucggUGgGGUUGAGCACGa---GCu -3'
miRNA:   3'- -CCAGua--ACgCCAACUUGUGCaacgCG- -5'
23325 3' -48.5 NC_005259.1 + 28015 0.71 0.859359
Target:  5'- gGGUCGccGgGGUUGcGCGCGUUG-GCc -3'
miRNA:   3'- -CCAGUaaCgCCAACuUGUGCAACgCG- -5'
23325 3' -48.5 NC_005259.1 + 56170 0.72 0.850778
Target:  5'- -cUCGUUGgccaCGGUgccGAcauACGCGUUGCGCg -3'
miRNA:   3'- ccAGUAAC----GCCAa--CU---UGUGCAACGCG- -5'
23325 3' -48.5 NC_005259.1 + 51634 0.73 0.794575
Target:  5'- aGGUCGUcggaGCGGUaggcGAACGgGUUGcCGCg -3'
miRNA:   3'- -CCAGUAa---CGCCAa---CUUGUgCAAC-GCG- -5'
23325 3' -48.5 NC_005259.1 + 9925 1.15 0.003229
Target:  5'- uGGUCAUUGCGGUUGAACACGUUGCGCc -3'
miRNA:   3'- -CCAGUAACGCCAACUUGUGCAACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.