miRNA display CGI


Results 141 - 160 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23325 5' -63.2 NC_005259.1 + 42465 0.71 0.186171
Target:  5'- -cGCCGACUacggcgagGCCCGGCCcguagaGCCGUgACCc -3'
miRNA:   3'- cuCGGCUGG--------CGGGCUGG------UGGCGgUGG- -5'
23325 5' -63.2 NC_005259.1 + 38924 0.71 0.186171
Target:  5'- uGAGCaCGucgguguuGCUguGCCCGguGCCGCUGCCGCCg -3'
miRNA:   3'- -CUCG-GC--------UGG--CGGGC--UGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 13564 0.71 0.18478
Target:  5'- -cGCCGAccCCGCCCcgacacccgaggacGACCccacguucgauuGCCGCUACCa -3'
miRNA:   3'- cuCGGCU--GGCGGG--------------CUGG------------UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 4571 0.71 0.181568
Target:  5'- -cGCCGAUCGucggcacguucCCCGACaaCACCGCCAUa -3'
miRNA:   3'- cuCGGCUGGC-----------GGGCUG--GUGGCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 44485 0.71 0.181114
Target:  5'- cGGGCCaguuggugacguaGACCGgggugcCCUGGCCACCcacGCCGCCg -3'
miRNA:   3'- -CUCGG-------------CUGGC------GGGCUGGUGG---CGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 45645 0.71 0.177066
Target:  5'- -cGCCGguGCCGCCgUGAaCACCGCCGuCCg -3'
miRNA:   3'- cuCGGC--UGGCGG-GCUgGUGGCGGU-GG- -5'
23325 5' -63.2 NC_005259.1 + 27475 0.71 0.177066
Target:  5'- gGGGCCGGgguCgGUgUGGCCACCGCC-CCa -3'
miRNA:   3'- -CUCGGCU---GgCGgGCUGGUGGCGGuGG- -5'
23325 5' -63.2 NC_005259.1 + 54858 0.71 0.195687
Target:  5'- aGGCCcGCUGCCCGAggauuCCGCacagcagGCCACCg -3'
miRNA:   3'- cUCGGcUGGCGGGCU-----GGUGg------CGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 56102 0.71 0.195687
Target:  5'- gGGGCC-ACCGCgUGGCCACCGaaACUg -3'
miRNA:   3'- -CUCGGcUGGCGgGCUGGUGGCggUGG- -5'
23325 5' -63.2 NC_005259.1 + 45821 0.71 0.205624
Target:  5'- uAGCCGgggaugaccauGCCGUCCGcACCACCGggGCCg -3'
miRNA:   3'- cUCGGC-----------UGGCGGGC-UGGUGGCggUGG- -5'
23325 5' -63.2 NC_005259.1 + 30151 0.71 0.205624
Target:  5'- cAGCUcgaccgGGCCGCCUacaGGCCGCCacaGCCGCCc -3'
miRNA:   3'- cUCGG------CUGGCGGG---CUGGUGG---CGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 20154 0.71 0.205624
Target:  5'- cAGCCgGugC-CCUGGCCACCGCgccCGCCg -3'
miRNA:   3'- cUCGG-CugGcGGGCUGGUGGCG---GUGG- -5'
23325 5' -63.2 NC_005259.1 + 29908 0.71 0.205624
Target:  5'- aGGGgUGGCUGCCCGAgaCCaucgacgcgugGCCGCCACg -3'
miRNA:   3'- -CUCgGCUGGCGGGCU--GG-----------UGGCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 19254 0.71 0.205117
Target:  5'- uGGCCGcCUGCCgGGCCGCCcgauggaagucauGaCCACCa -3'
miRNA:   3'- cUCGGCuGGCGGgCUGGUGG-------------C-GGUGG- -5'
23325 5' -63.2 NC_005259.1 + 15969 0.71 0.205117
Target:  5'- aAGUCG-CCGCCCaguucggucgaguGAUCACCGCCggugGCCg -3'
miRNA:   3'- cUCGGCuGGCGGG-------------CUGGUGGCGG----UGG- -5'
23325 5' -63.2 NC_005259.1 + 25049 0.71 0.202598
Target:  5'- uGGCCGGuaGCCCGuuuucaggcaaggguGgCGCUGCCACCg -3'
miRNA:   3'- cUCGGCUggCGGGC---------------UgGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 62131 0.71 0.200602
Target:  5'- cGAGgUGAUCGUCuCGACCACCucagGCCGCa -3'
miRNA:   3'- -CUCgGCUGGCGG-GCUGGUGG----CGGUGg -5'
23325 5' -63.2 NC_005259.1 + 28645 0.71 0.177066
Target:  5'- -uGCCGAcaCCGCCgaGGCCGCCGUCAa- -3'
miRNA:   3'- cuCGGCU--GGCGGg-CUGGUGGCGGUgg -5'
23325 5' -63.2 NC_005259.1 + 56764 0.71 0.200106
Target:  5'- uGGCCcaucgggGACCGCuuGAcaCCGCCGUUGCCg -3'
miRNA:   3'- cUCGG-------CUGGCGggCU--GGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 66257 0.71 0.195687
Target:  5'- cAGCgCGGCCcgcGCCgGGCggcggcucaCGCCGCCACCa -3'
miRNA:   3'- cUCG-GCUGG---CGGgCUG---------GUGGCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.