Results 61 - 80 of 223 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23325 | 5' | -63.2 | NC_005259.1 | + | 2219 | 0.71 | 0.195687 |
Target: 5'- --aCCGAgCGCCCGGCC-UCGCCAUUu -3' miRNA: 3'- cucGGCUgGCGGGCUGGuGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 54858 | 0.71 | 0.195687 |
Target: 5'- aGGCCcGCUGCCCGAggauuCCGCacagcagGCCACCg -3' miRNA: 3'- cUCGGcUGGCGGGCU-----GGUGg------CGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 56102 | 0.71 | 0.195687 |
Target: 5'- gGGGCC-ACCGCgUGGCCACCGaaACUg -3' miRNA: 3'- -CUCGGcUGGCGgGCUGGUGGCggUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 66257 | 0.71 | 0.195687 |
Target: 5'- cAGCgCGGCCcgcGCCgGGCggcggcucaCGCCGCCACCa -3' miRNA: 3'- cUCG-GCUGG---CGGgCUG---------GUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 56764 | 0.71 | 0.200106 |
Target: 5'- uGGCCcaucgggGACCGCuuGAcaCCGCCGUUGCCg -3' miRNA: 3'- cUCGG-------CUGGCGggCU--GGUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 36127 | 0.71 | 0.200602 |
Target: 5'- aAGCaguugGGCCGCCgGGCUGuCCGUCGCCa -3' miRNA: 3'- cUCGg----CUGGCGGgCUGGU-GGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 62131 | 0.71 | 0.200602 |
Target: 5'- cGAGgUGAUCGUCuCGACCACCucagGCCGCa -3' miRNA: 3'- -CUCgGCUGGCGG-GCUGGUGG----CGGUGg -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 25049 | 0.71 | 0.202598 |
Target: 5'- uGGCCGGuaGCCCGuuuucaggcaaggguGgCGCUGCCACCg -3' miRNA: 3'- cUCGGCUggCGGGC---------------UgGUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 15969 | 0.71 | 0.205117 |
Target: 5'- aAGUCG-CCGCCCaguucggucgaguGAUCACCGCCggugGCCg -3' miRNA: 3'- cUCGGCuGGCGGG-------------CUGGUGGCGG----UGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 12508 | 0.71 | 0.190877 |
Target: 5'- uAGCCGcuggGCCGCUCGGCUACCcGUagaGCCg -3' miRNA: 3'- cUCGGC----UGGCGGGCUGGUGG-CGg--UGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 42465 | 0.71 | 0.186171 |
Target: 5'- -cGCCGACUacggcgagGCCCGGCCcguagaGCCGUgACCc -3' miRNA: 3'- cuCGGCUGG--------CGGGCUGG------UGGCGgUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 28645 | 0.71 | 0.177066 |
Target: 5'- -uGCCGAcaCCGCCgaGGCCGCCGUCAa- -3' miRNA: 3'- cuCGGCU--GGCGGg-CUGGUGGCGGUgg -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 45645 | 0.71 | 0.177066 |
Target: 5'- -cGCCGguGCCGCCgUGAaCACCGCCGuCCg -3' miRNA: 3'- cuCGGC--UGGCGG-GCUgGUGGCGGU-GG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 44485 | 0.71 | 0.181114 |
Target: 5'- cGGGCCaguuggugacguaGACCGgggugcCCUGGCCACCcacGCCGCCg -3' miRNA: 3'- -CUCGG-------------CUGGC------GGGCUGGUGG---CGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 14867 | 0.71 | 0.181568 |
Target: 5'- cGAGguUCGcGCUGCCCGA--GCCGCCGCCg -3' miRNA: 3'- -CUC--GGC-UGGCGGGCUggUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 43817 | 0.71 | 0.181568 |
Target: 5'- -uGCCGggcguACCGCCgGACacaggGCCGCCGCUc -3' miRNA: 3'- cuCGGC-----UGGCGGgCUGg----UGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 46679 | 0.71 | 0.181568 |
Target: 5'- cGAGCU--CgGCCUGAgCCGCCGCCGCg -3' miRNA: 3'- -CUCGGcuGgCGGGCU-GGUGGCGGUGg -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 4571 | 0.71 | 0.181568 |
Target: 5'- -cGCCGAUCGucggcacguucCCCGACaaCACCGCCAUa -3' miRNA: 3'- cuCGGCUGGC-----------GGGCUG--GUGGCGGUGg -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 13564 | 0.71 | 0.18478 |
Target: 5'- -cGCCGAccCCGCCCcgacacccgaggacGACCccacguucgauuGCCGCUACCa -3' miRNA: 3'- cuCGGCU--GGCGGG--------------CUGG------------UGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 38924 | 0.71 | 0.186171 |
Target: 5'- uGAGCaCGucgguguuGCUguGCCCGguGCCGCUGCCGCCg -3' miRNA: 3'- -CUCG-GC--------UGG--CGGGC--UGGUGGCGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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