miRNA display CGI


Results 81 - 100 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23325 5' -63.2 NC_005259.1 + 46679 0.71 0.181568
Target:  5'- cGAGCU--CgGCCUGAgCCGCCGCCGCg -3'
miRNA:   3'- -CUCGGcuGgCGGGCU-GGUGGCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 4571 0.71 0.181568
Target:  5'- -cGCCGAUCGucggcacguucCCCGACaaCACCGCCAUa -3'
miRNA:   3'- cuCGGCUGGC-----------GGGCUG--GUGGCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 13564 0.71 0.18478
Target:  5'- -cGCCGAccCCGCCCcgacacccgaggacGACCccacguucgauuGCCGCUACCa -3'
miRNA:   3'- cuCGGCU--GGCGGG--------------CUGG------------UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 38924 0.71 0.186171
Target:  5'- uGAGCaCGucgguguuGCUguGCCCGguGCCGCUGCCGCCg -3'
miRNA:   3'- -CUCG-GC--------UGG--CGGGC--UGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 42465 0.71 0.186171
Target:  5'- -cGCCGACUacggcgagGCCCGGCCcguagaGCCGUgACCc -3'
miRNA:   3'- cuCGGCUGG--------CGGGCUGG------UGGCGgUGG- -5'
23325 5' -63.2 NC_005259.1 + 12508 0.71 0.190877
Target:  5'- uAGCCGcuggGCCGCUCGGCUACCcGUagaGCCg -3'
miRNA:   3'- cUCGGC----UGGCGGGCUGGUGG-CGg--UGG- -5'
23325 5' -63.2 NC_005259.1 + 37458 0.7 0.23239
Target:  5'- uGGcCCGAUUGgCUGGCCA-CGCCGCCg -3'
miRNA:   3'- cUC-GGCUGGCgGGCUGGUgGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 8545 0.7 0.23239
Target:  5'- uGAGCuCGGCgguguagcccaUGCgCCGcAgCACCGCCACCg -3'
miRNA:   3'- -CUCG-GCUG-----------GCG-GGC-UgGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 23654 0.7 0.23239
Target:  5'- -cGCCGACgGCgaCGGCUggACCGCCgACCc -3'
miRNA:   3'- cuCGGCUGgCGg-GCUGG--UGGCGG-UGG- -5'
23325 5' -63.2 NC_005259.1 + 42225 0.7 0.238084
Target:  5'- -cGCCG-CCGucCCCGGCCAucUCGaCCACCu -3'
miRNA:   3'- cuCGGCuGGC--GGGCUGGU--GGC-GGUGG- -5'
23325 5' -63.2 NC_005259.1 + 6055 0.7 0.238084
Target:  5'- cGAGCuCGugUGCgCGGugAUCGCCGCCg -3'
miRNA:   3'- -CUCG-GCugGCGgGCUggUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 4688 0.7 0.231827
Target:  5'- cGGGCCGACaGCUCGGCC-CCGUggugcgaugaccgCGCCc -3'
miRNA:   3'- -CUCGGCUGgCGGGCUGGuGGCG-------------GUGG- -5'
23325 5' -63.2 NC_005259.1 + 17425 0.7 0.230705
Target:  5'- aGGCCGcACUGCCCGAggaCAUuggcauugacgaugUGCCACCg -3'
miRNA:   3'- cUCGGC-UGGCGGGCUg--GUG--------------GCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 26801 0.7 0.226812
Target:  5'- -cGCCG-CCGCCCGGuuGgCCGgUACCg -3'
miRNA:   3'- cuCGGCuGGCGGGCUggU-GGCgGUGG- -5'
23325 5' -63.2 NC_005259.1 + 36449 0.7 0.220807
Target:  5'- aGGUCGACCGCgUcgaggguGAgCACCGCcCACCa -3'
miRNA:   3'- cUCGGCUGGCGgG-------CUgGUGGCG-GUGG- -5'
23325 5' -63.2 NC_005259.1 + 53247 0.7 0.215996
Target:  5'- -cGCCG-CCGacaCCG-UCGCCGCCGCUg -3'
miRNA:   3'- cuCGGCuGGCg--GGCuGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 38696 0.7 0.215467
Target:  5'- aGGuuGGCCaCCUgagacuguagguuGACCACCGCUGCCg -3'
miRNA:   3'- cUCggCUGGcGGG-------------CUGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 52571 0.7 0.210755
Target:  5'- uGGUCGACCGgaCCGGCCugAgCGUCGCCg -3'
miRNA:   3'- cUCGGCUGGCg-GGCUGG--UgGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 11801 0.7 0.20972
Target:  5'- cGGGCgCGACCcgcuugaGCUCGucgcugucguacuGCCACCGCCGCa -3'
miRNA:   3'- -CUCG-GCUGG-------CGGGC-------------UGGUGGCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 28576 0.69 0.243893
Target:  5'- -cGCC-ACCGCCUcuGA-CGCCGCCAUCg -3'
miRNA:   3'- cuCGGcUGGCGGG--CUgGUGGCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.