miRNA display CGI


Results 101 - 120 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23325 5' -63.2 NC_005259.1 + 68748 0.69 0.26203
Target:  5'- cGAGCuCGACC-CCggCGACC-UCGCCAUCg -3'
miRNA:   3'- -CUCG-GCUGGcGG--GCUGGuGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 18544 0.69 0.267049
Target:  5'- aGAGCCcGCCGa-CGAaccaucgccguaCGCCGCCGCCg -3'
miRNA:   3'- -CUCGGcUGGCggGCUg-----------GUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 18277 0.69 0.268315
Target:  5'- uGAGaCGACCucgacGCCCGACgaGCCGCCguucuGCCc -3'
miRNA:   3'- -CUCgGCUGG-----CGGGCUGg-UGGCGG-----UGG- -5'
23325 5' -63.2 NC_005259.1 + 30658 0.69 0.268315
Target:  5'- cAGCCGcagcacAUCGCCCGGCgaguaGCUGgCCACCu -3'
miRNA:   3'- cUCGGC------UGGCGGGCUGg----UGGC-GGUGG- -5'
23325 5' -63.2 NC_005259.1 + 37699 0.69 0.268315
Target:  5'- -cGCCGGacugauuuugccCUGCCaGACCcgaggcACCGCCGCCg -3'
miRNA:   3'- cuCGGCU------------GGCGGgCUGG------UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 47942 0.69 0.268315
Target:  5'- aAGCCGAUgacggcggUGCCgaUGGCCGCCgcGCCGCCc -3'
miRNA:   3'- cUCGGCUG--------GCGG--GCUGGUGG--CGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 39500 0.69 0.268315
Target:  5'- cGAGCuUGAUgGCCgCG-CCGCUGgCCACCa -3'
miRNA:   3'- -CUCG-GCUGgCGG-GCuGGUGGC-GGUGG- -5'
23325 5' -63.2 NC_005259.1 + 39560 0.69 0.268315
Target:  5'- uGAGCCGGUCGUCCGGCCcgaccucgauGCUGUUGCUg -3'
miRNA:   3'- -CUCGGCUGGCGGGCUGG----------UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 5170 0.69 0.255866
Target:  5'- gGGGaCCGACCaaugaaacucUCCGA-CGCCGCCGCCa -3'
miRNA:   3'- -CUC-GGCUGGc---------GGGCUgGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 23544 0.69 0.24982
Target:  5'- cAGCCG-CCGCCuCGACCGCaa-CAUCa -3'
miRNA:   3'- cUCGGCuGGCGG-GCUGGUGgcgGUGG- -5'
23325 5' -63.2 NC_005259.1 + 7863 0.69 0.24982
Target:  5'- -cGCCGACCccggugGCCCGAgUGCUuggacucgggcaGCCGCCg -3'
miRNA:   3'- cuCGGCUGG------CGGGCUgGUGG------------CGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 28576 0.69 0.243893
Target:  5'- -cGCC-ACCGCCUcuGA-CGCCGCCAUCg -3'
miRNA:   3'- cuCGGcUGGCGGG--CUgGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 60131 0.69 0.243893
Target:  5'- cGGCCucgucCUGCgCGGCCuugGCCGCCGCCu -3'
miRNA:   3'- cUCGGcu---GGCGgGCUGG---UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 35627 0.69 0.243893
Target:  5'- cGAGUaguucgGGCCGCC--GCCGCUGCCGCUg -3'
miRNA:   3'- -CUCGg-----CUGGCGGgcUGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 35880 0.69 0.243893
Target:  5'- cAGCCG-CCGCCgaggcaGACCACgGCgaGCCa -3'
miRNA:   3'- cUCGGCuGGCGGg-----CUGGUGgCGg-UGG- -5'
23325 5' -63.2 NC_005259.1 + 37378 0.69 0.243893
Target:  5'- -cGCCcucggcACCGCCCG-CCG-CGCCGCCc -3'
miRNA:   3'- cuCGGc-----UGGCGGGCuGGUgGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 36962 0.69 0.24982
Target:  5'- -cGCgaGACCGCCuCGGCCcgcACCGCCgaacgucgcACCg -3'
miRNA:   3'- cuCGg-CUGGCGG-GCUGG---UGGCGG---------UGG- -5'
23325 5' -63.2 NC_005259.1 + 32316 0.69 0.24982
Target:  5'- uGAGCCGcagugcCCGCCaauuGugCGCgGCCAUCa -3'
miRNA:   3'- -CUCGGCu-----GGCGGg---CugGUGgCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 48913 0.69 0.24982
Target:  5'- cGAGCUG-CUggGCCUGACCGaCGCCACg -3'
miRNA:   3'- -CUCGGCuGG--CGGGCUGGUgGCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 46886 0.69 0.270863
Target:  5'- -cGCCG-CCGCCCGcgaugagcgcCCGCCgagcaguccgcgugcGCCGCCg -3'
miRNA:   3'- cuCGGCuGGCGGGCu---------GGUGG---------------CGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.