Results 81 - 100 of 223 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23325 | 5' | -63.2 | NC_005259.1 | + | 15969 | 0.71 | 0.205117 |
Target: 5'- aAGUCG-CCGCCCaguucggucgaguGAUCACCGCCggugGCCg -3' miRNA: 3'- cUCGGCuGGCGGG-------------CUGGUGGCGG----UGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 19254 | 0.71 | 0.205117 |
Target: 5'- uGGCCGcCUGCCgGGCCGCCcgauggaagucauGaCCACCa -3' miRNA: 3'- cUCGGCuGGCGGgCUGGUGG-------------C-GGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 45821 | 0.71 | 0.205624 |
Target: 5'- uAGCCGgggaugaccauGCCGUCCGcACCACCGggGCCg -3' miRNA: 3'- cUCGGC-----------UGGCGGGC-UGGUGGCggUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 30151 | 0.71 | 0.205624 |
Target: 5'- cAGCUcgaccgGGCCGCCUacaGGCCGCCacaGCCGCCc -3' miRNA: 3'- cUCGG------CUGGCGGG---CUGGUGG---CGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 20154 | 0.71 | 0.205624 |
Target: 5'- cAGCCgGugC-CCUGGCCACCGCgccCGCCg -3' miRNA: 3'- cUCGG-CugGcGGGCUGGUGGCG---GUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 29908 | 0.71 | 0.205624 |
Target: 5'- aGGGgUGGCUGCCCGAgaCCaucgacgcgugGCCGCCACg -3' miRNA: 3'- -CUCgGCUGGCGGGCU--GG-----------UGGCGGUGg -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 11801 | 0.7 | 0.20972 |
Target: 5'- cGGGCgCGACCcgcuugaGCUCGucgcugucguacuGCCACCGCCGCa -3' miRNA: 3'- -CUCG-GCUGG-------CGGGC-------------UGGUGGCGGUGg -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 52571 | 0.7 | 0.210755 |
Target: 5'- uGGUCGACCGgaCCGGCCugAgCGUCGCCg -3' miRNA: 3'- cUCGGCUGGCg-GGCUGG--UgGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 38696 | 0.7 | 0.215467 |
Target: 5'- aGGuuGGCCaCCUgagacuguagguuGACCACCGCUGCCg -3' miRNA: 3'- cUCggCUGGcGGG-------------CUGGUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 53247 | 0.7 | 0.215996 |
Target: 5'- -cGCCG-CCGacaCCG-UCGCCGCCGCUg -3' miRNA: 3'- cuCGGCuGGCg--GGCuGGUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 36449 | 0.7 | 0.220807 |
Target: 5'- aGGUCGACCGCgUcgaggguGAgCACCGCcCACCa -3' miRNA: 3'- cUCGGCUGGCGgG-------CUgGUGGCG-GUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 26801 | 0.7 | 0.226812 |
Target: 5'- -cGCCG-CCGCCCGGuuGgCCGgUACCg -3' miRNA: 3'- cuCGGCuGGCGGGCUggU-GGCgGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 17425 | 0.7 | 0.230705 |
Target: 5'- aGGCCGcACUGCCCGAggaCAUuggcauugacgaugUGCCACCg -3' miRNA: 3'- cUCGGC-UGGCGGGCUg--GUG--------------GCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 4688 | 0.7 | 0.231827 |
Target: 5'- cGGGCCGACaGCUCGGCC-CCGUggugcgaugaccgCGCCc -3' miRNA: 3'- -CUCGGCUGgCGGGCUGGuGGCG-------------GUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 23654 | 0.7 | 0.23239 |
Target: 5'- -cGCCGACgGCgaCGGCUggACCGCCgACCc -3' miRNA: 3'- cuCGGCUGgCGg-GCUGG--UGGCGG-UGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 8545 | 0.7 | 0.23239 |
Target: 5'- uGAGCuCGGCgguguagcccaUGCgCCGcAgCACCGCCACCg -3' miRNA: 3'- -CUCG-GCUG-----------GCG-GGC-UgGUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 37458 | 0.7 | 0.23239 |
Target: 5'- uGGcCCGAUUGgCUGGCCA-CGCCGCCg -3' miRNA: 3'- cUC-GGCUGGCgGGCUGGUgGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 42225 | 0.7 | 0.238084 |
Target: 5'- -cGCCG-CCGucCCCGGCCAucUCGaCCACCu -3' miRNA: 3'- cuCGGCuGGC--GGGCUGGU--GGC-GGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 6055 | 0.7 | 0.238084 |
Target: 5'- cGAGCuCGugUGCgCGGugAUCGCCGCCg -3' miRNA: 3'- -CUCG-GCugGCGgGCUggUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 28576 | 0.69 | 0.243893 |
Target: 5'- -cGCC-ACCGCCUcuGA-CGCCGCCAUCg -3' miRNA: 3'- cuCGGcUGGCGGG--CUgGUGGCGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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