Results 101 - 120 of 223 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23325 | 5' | -63.2 | NC_005259.1 | + | 35880 | 0.69 | 0.243893 |
Target: 5'- cAGCCG-CCGCCgaggcaGACCACgGCgaGCCa -3' miRNA: 3'- cUCGGCuGGCGGg-----CUGGUGgCGg-UGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 35627 | 0.69 | 0.243893 |
Target: 5'- cGAGUaguucgGGCCGCC--GCCGCUGCCGCUg -3' miRNA: 3'- -CUCGg-----CUGGCGGgcUGGUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 60131 | 0.69 | 0.243893 |
Target: 5'- cGGCCucgucCUGCgCGGCCuugGCCGCCGCCu -3' miRNA: 3'- cUCGGcu---GGCGgGCUGG---UGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 28576 | 0.69 | 0.243893 |
Target: 5'- -cGCC-ACCGCCUcuGA-CGCCGCCAUCg -3' miRNA: 3'- cuCGGcUGGCGGG--CUgGUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 12329 | 0.69 | 0.243893 |
Target: 5'- -cGCCG-CCaGCUC-ACgCACCGCCGCCu -3' miRNA: 3'- cuCGGCuGG-CGGGcUG-GUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 23544 | 0.69 | 0.24982 |
Target: 5'- cAGCCG-CCGCCuCGACCGCaa-CAUCa -3' miRNA: 3'- cUCGGCuGGCGG-GCUGGUGgcgGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 7863 | 0.69 | 0.24982 |
Target: 5'- -cGCCGACCccggugGCCCGAgUGCUuggacucgggcaGCCGCCg -3' miRNA: 3'- cuCGGCUGG------CGGGCUgGUGG------------CGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 48913 | 0.69 | 0.24982 |
Target: 5'- cGAGCUG-CUggGCCUGACCGaCGCCACg -3' miRNA: 3'- -CUCGGCuGG--CGGGCUGGUgGCGGUGg -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 32316 | 0.69 | 0.24982 |
Target: 5'- uGAGCCGcagugcCCGCCaauuGugCGCgGCCAUCa -3' miRNA: 3'- -CUCGGCu-----GGCGGg---CugGUGgCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 36962 | 0.69 | 0.24982 |
Target: 5'- -cGCgaGACCGCCuCGGCCcgcACCGCCgaacgucgcACCg -3' miRNA: 3'- cuCGg-CUGGCGG-GCUGG---UGGCGG---------UGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 5170 | 0.69 | 0.255866 |
Target: 5'- gGGGaCCGACCaaugaaacucUCCGA-CGCCGCCGCCa -3' miRNA: 3'- -CUC-GGCUGGc---------GGGCUgGUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 28982 | 0.69 | 0.26203 |
Target: 5'- aGGCCgcGAgCGCCCG-CUACgGCCACg -3' miRNA: 3'- cUCGG--CUgGCGGGCuGGUGgCGGUGg -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 68748 | 0.69 | 0.26203 |
Target: 5'- cGAGCuCGACC-CCggCGACC-UCGCCAUCg -3' miRNA: 3'- -CUCG-GCUGGcGG--GCUGGuGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 18544 | 0.69 | 0.267049 |
Target: 5'- aGAGCCcGCCGa-CGAaccaucgccguaCGCCGCCGCCg -3' miRNA: 3'- -CUCGGcUGGCggGCUg-----------GUGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 39560 | 0.69 | 0.268315 |
Target: 5'- uGAGCCGGUCGUCCGGCCcgaccucgauGCUGUUGCUg -3' miRNA: 3'- -CUCGGCUGGCGGGCUGG----------UGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 39500 | 0.69 | 0.268315 |
Target: 5'- cGAGCuUGAUgGCCgCG-CCGCUGgCCACCa -3' miRNA: 3'- -CUCG-GCUGgCGG-GCuGGUGGC-GGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 47942 | 0.69 | 0.268315 |
Target: 5'- aAGCCGAUgacggcggUGCCgaUGGCCGCCgcGCCGCCc -3' miRNA: 3'- cUCGGCUG--------GCGG--GCUGGUGG--CGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 37699 | 0.69 | 0.268315 |
Target: 5'- -cGCCGGacugauuuugccCUGCCaGACCcgaggcACCGCCGCCg -3' miRNA: 3'- cuCGGCU------------GGCGGgCUGG------UGGCGGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 30658 | 0.69 | 0.268315 |
Target: 5'- cAGCCGcagcacAUCGCCCGGCgaguaGCUGgCCACCu -3' miRNA: 3'- cUCGGC------UGGCGGGCUGg----UGGC-GGUGG- -5' |
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23325 | 5' | -63.2 | NC_005259.1 | + | 18277 | 0.69 | 0.268315 |
Target: 5'- uGAGaCGACCucgacGCCCGACgaGCCGCCguucuGCCc -3' miRNA: 3'- -CUCgGCUGG-----CGGGCUGg-UGGCGG-----UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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