miRNA display CGI


Results 81 - 100 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23325 5' -63.2 NC_005259.1 + 23890 0.77 0.07303
Target:  5'- -cGCUG-CCGCCCGAgCCGCCGCgccCGCCg -3'
miRNA:   3'- cuCGGCuGGCGGGCU-GGUGGCG---GUGG- -5'
23325 5' -63.2 NC_005259.1 + 23964 0.74 0.120593
Target:  5'- cGGGCCGAUUGaCCuCGuacCCGCgCGCCACCa -3'
miRNA:   3'- -CUCGGCUGGC-GG-GCu--GGUG-GCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 24098 0.68 0.294674
Target:  5'- aGGGCCaacgaACCGaugggaCCGggcggggacuacACCGCCGCCGCCc -3'
miRNA:   3'- -CUCGGc----UGGCg-----GGC------------UGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 24800 0.68 0.2879
Target:  5'- aGGGCCaaGACCGaggugcCCCGGCaCGCCGUgcccgCACCg -3'
miRNA:   3'- -CUCGG--CUGGC------GGGCUG-GUGGCG-----GUGG- -5'
23325 5' -63.2 NC_005259.1 + 24862 0.68 0.323005
Target:  5'- -cGCCGAggcCCGCCUcGCUcugACCGCUAUCg -3'
miRNA:   3'- cuCGGCU---GGCGGGcUGG---UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 25049 0.71 0.202598
Target:  5'- uGGCCGGuaGCCCGuuuucaggcaaggguGgCGCUGCCACCg -3'
miRNA:   3'- cUCGGCUggCGGGC---------------UgGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 25165 0.68 0.2879
Target:  5'- aAGCCcguuggGUCCGACCcguacGCCGCCGCCg -3'
miRNA:   3'- cUCGGcugg--CGGGCUGG-----UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 25904 0.85 0.019271
Target:  5'- cGAGgaUGGCCGCCUGAgCCGCCGCCGCCg -3'
miRNA:   3'- -CUCg-GCUGGCGGGCU-GGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 25948 0.67 0.361207
Target:  5'- -cGCCGgu-GCCCGGcCCGCCGaCGCCu -3'
miRNA:   3'- cuCGGCuggCGGGCU-GGUGGCgGUGG- -5'
23325 5' -63.2 NC_005259.1 + 26038 0.72 0.168359
Target:  5'- uGGCCagcagcGCCGCCggguUGGCCauGCCGCCGCCg -3'
miRNA:   3'- cUCGGc-----UGGCGG----GCUGG--UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 26098 0.79 0.054346
Target:  5'- cGAGaaGACC-CCCGAgcagaCCGCCGCCGCCg -3'
miRNA:   3'- -CUCggCUGGcGGGCU-----GGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 26503 0.67 0.358038
Target:  5'- cGAGCUcGCCGCCCGGCgagaagagCGCggugagcagcuugGCCACCa -3'
miRNA:   3'- -CUCGGcUGGCGGGCUG--------GUGg------------CGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 26729 0.66 0.391437
Target:  5'- cGGGCCGACCugcuggcagaccugGCUCacguaauccuGACCGaugaUGCCGCCg -3'
miRNA:   3'- -CUCGGCUGG--------------CGGG----------CUGGUg---GCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 26801 0.7 0.226812
Target:  5'- -cGCCG-CCGCCCGGuuGgCCGgUACCg -3'
miRNA:   3'- cuCGGCuGGCGGGCUggU-GGCgGUGG- -5'
23325 5' -63.2 NC_005259.1 + 27267 0.66 0.377344
Target:  5'- aGGaCCGauacGCCGCCUugaGCCGCCGCUGCa -3'
miRNA:   3'- cUC-GGC----UGGCGGGc--UGGUGGCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 27475 0.71 0.177066
Target:  5'- gGGGCCGGgguCgGUgUGGCCACCGCC-CCa -3'
miRNA:   3'- -CUCGGCU---GgCGgGCUGGUGGCGGuGG- -5'
23325 5' -63.2 NC_005259.1 + 28133 0.68 0.287229
Target:  5'- -uGCCGacguaggcgaugaGCUGCCCGGCCucgACgCGCUGCCc -3'
miRNA:   3'- cuCGGC-------------UGGCGGGCUGG---UG-GCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 28363 0.66 0.377344
Target:  5'- -uGCUGGCUGCCCcACCucggGCCGaaACCg -3'
miRNA:   3'- cuCGGCUGGCGGGcUGG----UGGCggUGG- -5'
23325 5' -63.2 NC_005259.1 + 28576 0.69 0.243893
Target:  5'- -cGCC-ACCGCCUcuGA-CGCCGCCAUCg -3'
miRNA:   3'- cuCGGcUGGCGGG--CUgGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 28645 0.71 0.177066
Target:  5'- -uGCCGAcaCCGCCgaGGCCGCCGUCAa- -3'
miRNA:   3'- cuCGGCU--GGCGGg-CUGGUGGCGGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.