miRNA display CGI


Results 101 - 120 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23325 5' -63.2 NC_005259.1 + 28851 0.68 0.294674
Target:  5'- aAGUCGACCGCCCcACCGagggaCGUUggGCCg -3'
miRNA:   3'- cUCGGCUGGCGGGcUGGUg----GCGG--UGG- -5'
23325 5' -63.2 NC_005259.1 + 28982 0.69 0.26203
Target:  5'- aGGCCgcGAgCGCCCG-CUACgGCCACg -3'
miRNA:   3'- cUCGG--CUgGCGGGCuGGUGgCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 29054 0.74 0.108067
Target:  5'- aGAGCCGcgagcgcgguauCgGCCCGAUCugCGCUGCCa -3'
miRNA:   3'- -CUCGGCu-----------GgCGGGCUGGugGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 29451 0.66 0.419753
Target:  5'- cAGCCaGcgugaccuuGCCGCCCGGCUcggcauggACCGCCGu- -3'
miRNA:   3'- cUCGG-C---------UGGCGGGCUGG--------UGGCGGUgg -5'
23325 5' -63.2 NC_005259.1 + 29908 0.71 0.205624
Target:  5'- aGGGgUGGCUGCCCGAgaCCaucgacgcgugGCCGCCACg -3'
miRNA:   3'- -CUCgGCUGGCGGGCU--GG-----------UGGCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 30151 0.71 0.205624
Target:  5'- cAGCUcgaccgGGCCGCCUacaGGCCGCCacaGCCGCCc -3'
miRNA:   3'- cUCGG------CUGGCGGG---CUGGUGG---CGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 30658 0.69 0.268315
Target:  5'- cAGCCGcagcacAUCGCCCGGCgaguaGCUGgCCACCu -3'
miRNA:   3'- cUCGGC------UGGCGGGCUGg----UGGC-GGUGG- -5'
23325 5' -63.2 NC_005259.1 + 30765 0.68 0.301571
Target:  5'- -uGCCGA-CGCCgGuGgCACCGCUGCCg -3'
miRNA:   3'- cuCGGCUgGCGGgC-UgGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 31566 0.67 0.35332
Target:  5'- -cGCUGcACCgcGCCUGAUCGUCGCCAUCa -3'
miRNA:   3'- cuCGGC-UGG--CGGGCUGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 31810 0.67 0.337916
Target:  5'- cGAGCuCGACCGaCCCcACCGCgC-CCGCg -3'
miRNA:   3'- -CUCG-GCUGGC-GGGcUGGUG-GcGGUGg -5'
23325 5' -63.2 NC_005259.1 + 32316 0.69 0.24982
Target:  5'- uGAGCCGcagugcCCGCCaauuGugCGCgGCCAUCa -3'
miRNA:   3'- -CUCGGCu-----GGCGGg---CugGUGgCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 32793 0.68 0.301571
Target:  5'- cGAGUCGuagcCCGaggucgauCCCGACgCACCGCCGUCg -3'
miRNA:   3'- -CUCGGCu---GGC--------GGGCUG-GUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 33555 0.68 0.315736
Target:  5'- -cGCCGgucaggaagaACCGCCCGAacuugaCCGCgucgcggGCCACCg -3'
miRNA:   3'- cuCGGC----------UGGCGGGCU------GGUGg------CGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 33608 0.66 0.377344
Target:  5'- cGGUCGAgCUGCaaCCGGCCACCGaaACUg -3'
miRNA:   3'- cUCGGCU-GGCG--GGCUGGUGGCggUGG- -5'
23325 5' -63.2 NC_005259.1 + 33660 0.68 0.308592
Target:  5'- cAGCCGAgggUGCCCGGCCcACCcuguGCgACCa -3'
miRNA:   3'- cUCGGCUg--GCGGGCUGG-UGG----CGgUGG- -5'
23325 5' -63.2 NC_005259.1 + 34896 0.66 0.402443
Target:  5'- cGGGCaggacgGGCCGCUCGGgcaucaCACUGCUGCCu -3'
miRNA:   3'- -CUCGg-----CUGGCGGGCUg-----GUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 35045 0.68 0.294674
Target:  5'- uAGCCGGaugaugUCGCCgGACaCGCCGCCcuuGCUg -3'
miRNA:   3'- cUCGGCU------GGCGGgCUG-GUGGCGG---UGG- -5'
23325 5' -63.2 NC_005259.1 + 35518 0.78 0.060532
Target:  5'- -cGCCG-CCGCCgGGCaCACCGcCCGCCg -3'
miRNA:   3'- cuCGGCuGGCGGgCUG-GUGGC-GGUGG- -5'
23325 5' -63.2 NC_005259.1 + 35546 0.82 0.030629
Target:  5'- -cGCCGAuCCGCCCGaugacuuGCCGCCGaCCGCCg -3'
miRNA:   3'- cuCGGCU-GGCGGGC-------UGGUGGC-GGUGG- -5'
23325 5' -63.2 NC_005259.1 + 35627 0.69 0.243893
Target:  5'- cGAGUaguucgGGCCGCC--GCCGCUGCCGCUg -3'
miRNA:   3'- -CUCGg-----CUGGCGGgcUGGUGGCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.