miRNA display CGI


Results 61 - 80 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23325 5' -63.2 NC_005259.1 + 44431 0.68 0.311434
Target:  5'- -cGCCGAuaCCgGCCCcgaagauguucuugaGACCggggauGCCGCCGCCc -3'
miRNA:   3'- cuCGGCU--GG-CGGG---------------CUGG------UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 44230 0.66 0.402443
Target:  5'- cGAGCU---CGCCCG-CCG-CGCCGCCc -3'
miRNA:   3'- -CUCGGcugGCGGGCuGGUgGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 44189 0.66 0.419753
Target:  5'- aAGUCGACCGCUCGcgucguauCCGCgACCc -3'
miRNA:   3'- cUCGGCUGGCGGGCuggu----GGCGgUGG- -5'
23325 5' -63.2 NC_005259.1 + 44085 0.68 0.2879
Target:  5'- uGGCUGACCuGCUCGAUCACguCGaCCAUCu -3'
miRNA:   3'- cUCGGCUGG-CGGGCUGGUG--GC-GGUGG- -5'
23325 5' -63.2 NC_005259.1 + 43965 0.72 0.164151
Target:  5'- gGGGCCG-CCGCCUGACCGagggCGgUGCCg -3'
miRNA:   3'- -CUCGGCuGGCGGGCUGGUg---GCgGUGG- -5'
23325 5' -63.2 NC_005259.1 + 43817 0.71 0.181568
Target:  5'- -uGCCGggcguACCGCCgGACacaggGCCGCCGCUc -3'
miRNA:   3'- cuCGGC-----UGGCGGgCUGg----UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 43712 0.66 0.382279
Target:  5'- -cGCgCGACCGCaucgagucgauggCGGCCauGCCGCCgaGCCg -3'
miRNA:   3'- cuCG-GCUGGCGg------------GCUGG--UGGCGG--UGG- -5'
23325 5' -63.2 NC_005259.1 + 43658 0.74 0.117187
Target:  5'- -cGCCGACgGUgucguugCCGAUcaCACCGCCGCCg -3'
miRNA:   3'- cuCGGCUGgCG-------GGCUG--GUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 43275 0.73 0.130353
Target:  5'- aGAGuuGACCGCagCGcCCGCCGCCgacgcGCCc -3'
miRNA:   3'- -CUCggCUGGCGg-GCuGGUGGCGG-----UGG- -5'
23325 5' -63.2 NC_005259.1 + 42516 0.68 0.301571
Target:  5'- uGGCCagcaGCCGUCCGGCC-CCGaugggCACCg -3'
miRNA:   3'- cUCGGc---UGGCGGGCUGGuGGCg----GUGG- -5'
23325 5' -63.2 NC_005259.1 + 42465 0.71 0.186171
Target:  5'- -cGCCGACUacggcgagGCCCGGCCcguagaGCCGUgACCc -3'
miRNA:   3'- cuCGGCUGG--------CGGGCUGG------UGGCGgUGG- -5'
23325 5' -63.2 NC_005259.1 + 42225 0.7 0.238084
Target:  5'- -cGCCG-CCGucCCCGGCCAucUCGaCCACCu -3'
miRNA:   3'- cuCGGCuGGC--GGGCUGGU--GGC-GGUGG- -5'
23325 5' -63.2 NC_005259.1 + 40836 0.72 0.164151
Target:  5'- uGGGCCGcguguugauGCCcugcGCCuCGACCAUgGCCGCCc -3'
miRNA:   3'- -CUCGGC---------UGG----CGG-GCUGGUGgCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 40689 0.67 0.35332
Target:  5'- -uGCUcACCgGCCCGAUgAucggggugcCCGCCACCa -3'
miRNA:   3'- cuCGGcUGG-CGGGCUGgU---------GGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 39970 0.78 0.056896
Target:  5'- uGAG-CGACUGCUCGACCACCucgacgggcugaucGCCGCCg -3'
miRNA:   3'- -CUCgGCUGGCGGGCUGGUGG--------------CGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 39902 0.68 0.323005
Target:  5'- -cGCCG-CCGCCCG-CCucgauCCGUCgaggGCCg -3'
miRNA:   3'- cuCGGCuGGCGGGCuGGu----GGCGG----UGG- -5'
23325 5' -63.2 NC_005259.1 + 39560 0.69 0.268315
Target:  5'- uGAGCCGGUCGUCCGGCCcgaccucgauGCUGUUGCUg -3'
miRNA:   3'- -CUCGGCUGGCGGGCUGG----------UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 39500 0.69 0.268315
Target:  5'- cGAGCuUGAUgGCCgCG-CCGCUGgCCACCa -3'
miRNA:   3'- -CUCG-GCUGgCGG-GCuGGUGGC-GGUGG- -5'
23325 5' -63.2 NC_005259.1 + 38924 0.71 0.186171
Target:  5'- uGAGCaCGucgguguuGCUguGCCCGguGCCGCUGCCGCCg -3'
miRNA:   3'- -CUCG-GC--------UGG--CGGGC--UGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 38696 0.7 0.215467
Target:  5'- aGGuuGGCCaCCUgagacuguagguuGACCACCGCUGCCg -3'
miRNA:   3'- cUCggCUGGcGGG-------------CUGGUGGCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.