miRNA display CGI


Results 81 - 100 of 223 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23325 5' -63.2 NC_005259.1 + 38641 0.68 0.294674
Target:  5'- -cGCCGAguuggcgaacUCGCCgaaauCGACCACCucgcuguugGCCGCCg -3'
miRNA:   3'- cuCGGCU----------GGCGG-----GCUGGUGG---------CGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 38370 0.67 0.330399
Target:  5'- cGAGCCGugCGa-CGACCAUguUGUUGCCg -3'
miRNA:   3'- -CUCGGCugGCggGCUGGUG--GCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 37699 0.69 0.268315
Target:  5'- -cGCCGGacugauuuugccCUGCCaGACCcgaggcACCGCCGCCg -3'
miRNA:   3'- cuCGGCU------------GGCGGgCUGG------UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 37641 0.81 0.038202
Target:  5'- -uGCCcgauGACCGCaCCG-CCGCCGCCGCCg -3'
miRNA:   3'- cuCGG----CUGGCG-GGCuGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 37568 0.68 0.315736
Target:  5'- -uGUCGACUGCUCG-CCGCC-CgCGCCg -3'
miRNA:   3'- cuCGGCUGGCGGGCuGGUGGcG-GUGG- -5'
23325 5' -63.2 NC_005259.1 + 37526 0.66 0.411041
Target:  5'- cGAGaaGAUCGUCgGGCCGCCGUugUugCg -3'
miRNA:   3'- -CUCggCUGGCGGgCUGGUGGCG--GugG- -5'
23325 5' -63.2 NC_005259.1 + 37458 0.7 0.23239
Target:  5'- uGGcCCGAUUGgCUGGCCA-CGCCGCCg -3'
miRNA:   3'- cUC-GGCUGGCgGGCUGGUgGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 37420 0.66 0.419753
Target:  5'- -cGCCGcCCGCCguGCCAUUGgCCAUCg -3'
miRNA:   3'- cuCGGCuGGCGGgcUGGUGGC-GGUGG- -5'
23325 5' -63.2 NC_005259.1 + 37378 0.69 0.243893
Target:  5'- -cGCCcucggcACCGCCCG-CCG-CGCCGCCc -3'
miRNA:   3'- cuCGGc-----UGGCGGGCuGGUgGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 37233 0.67 0.330399
Target:  5'- -cGCUGGCCcguGCCgGAuUgGCUGCCGCCg -3'
miRNA:   3'- cuCGGCUGG---CGGgCU-GgUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 37193 0.81 0.038202
Target:  5'- cGAGCUGcggcccuuGCCGCCaCcGCCGCCGCCGCCg -3'
miRNA:   3'- -CUCGGC--------UGGCGG-GcUGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 37155 0.74 0.117493
Target:  5'- uAGCCGucACCGCCgCGcCCGCCGaCGCCg -3'
miRNA:   3'- cUCGGC--UGGCGG-GCuGGUGGCgGUGG- -5'
23325 5' -63.2 NC_005259.1 + 37036 0.68 0.315736
Target:  5'- -uGUCGAUCuugguGCCCG-CCACCGcCCACg -3'
miRNA:   3'- cuCGGCUGG-----CGGGCuGGUGGC-GGUGg -5'
23325 5' -63.2 NC_005259.1 + 36962 0.69 0.24982
Target:  5'- -cGCgaGACCGCCuCGGCCcgcACCGCCgaacgucgcACCg -3'
miRNA:   3'- cuCGg-CUGGCGG-GCUGG---UGGCGG---------UGG- -5'
23325 5' -63.2 NC_005259.1 + 36848 0.67 0.344787
Target:  5'- -uGCUGacGCCGCCCGcugcgccguugcuGgCACCGCCcgcGCCg -3'
miRNA:   3'- cuCGGC--UGGCGGGC-------------UgGUGGCGG---UGG- -5'
23325 5' -63.2 NC_005259.1 + 36782 0.66 0.411041
Target:  5'- -uGCCG-CCGuCCUGACCGCuCGCguCg -3'
miRNA:   3'- cuCGGCuGGC-GGGCUGGUG-GCGguGg -5'
23325 5' -63.2 NC_005259.1 + 36711 0.75 0.095251
Target:  5'- uGAGCuCGuGCCGCUCGAcCCGCCGCgccCGCCg -3'
miRNA:   3'- -CUCG-GC-UGGCGGGCU-GGUGGCG---GUGG- -5'
23325 5' -63.2 NC_005259.1 + 36657 0.9 0.007543
Target:  5'- cGAGCCG-CCGCCCucGCCGCCGCCGCCg -3'
miRNA:   3'- -CUCGGCuGGCGGGc-UGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 36449 0.7 0.220807
Target:  5'- aGGUCGACCGCgUcgaggguGAgCACCGCcCACCa -3'
miRNA:   3'- cUCGGCUGGCGgG-------CUgGUGGCG-GUGG- -5'
23325 5' -63.2 NC_005259.1 + 36127 0.71 0.200602
Target:  5'- aAGCaguugGGCCGCCgGGCUGuCCGUCGCCa -3'
miRNA:   3'- cUCGg----CUGGCGGgCUGGU-GGCGGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.