miRNA display CGI


Results 101 - 120 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23325 5' -63.2 NC_005259.1 + 43965 0.72 0.164151
Target:  5'- gGGGCCG-CCGCCUGACCGagggCGgUGCCg -3'
miRNA:   3'- -CUCGGCuGGCGGGCUGGUg---GCgGUGG- -5'
23325 5' -63.2 NC_005259.1 + 6100 0.72 0.168359
Target:  5'- -cGCCGAgaUCGCCgaGGCCgagGCCGCCGCUa -3'
miRNA:   3'- cuCGGCU--GGCGGg-CUGG---UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 15538 0.72 0.168359
Target:  5'- aGGCCG-CCGUcaCUGGCCGgUGCCACCc -3'
miRNA:   3'- cUCGGCuGGCG--GGCUGGUgGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 26038 0.72 0.168359
Target:  5'- uGGCCagcagcGCCGCCggguUGGCCauGCCGCCGCCg -3'
miRNA:   3'- cUCGGc-----UGGCGG----GCUGG--UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 7264 0.72 0.172664
Target:  5'- -cGCCaagaaACUGCUCGGCUACCGCC-CCg -3'
miRNA:   3'- cuCGGc----UGGCGGGCUGGUGGCGGuGG- -5'
23325 5' -63.2 NC_005259.1 + 21027 0.73 0.130016
Target:  5'- cAGCUGACCGaugaCCGGCgcgcguucaagguCGCCGCCAUCg -3'
miRNA:   3'- cUCGGCUGGCg---GGCUG-------------GUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 46556 0.74 0.12506
Target:  5'- -cGCCGACCGCgCCuauggucgcggcgucGACCG-CGCCGCCc -3'
miRNA:   3'- cuCGGCUGGCG-GG---------------CUGGUgGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 36711 0.75 0.095251
Target:  5'- uGAGCuCGuGCCGCUCGAcCCGCCGCgccCGCCg -3'
miRNA:   3'- -CUCG-GC-UGGCGGGCU-GGUGGCG---GUGG- -5'
23325 5' -63.2 NC_005259.1 + 44650 0.75 0.103082
Target:  5'- -uGCCG-CCGCCCGACUcgaaCGCCACa -3'
miRNA:   3'- cuCGGCuGGCGGGCUGGug--GCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 66745 0.75 0.105824
Target:  5'- aGGCUGauGCUGCCCGGCCugccagucgACCGCCugCu -3'
miRNA:   3'- cUCGGC--UGGCGGGCUGG---------UGGCGGugG- -5'
23325 5' -63.2 NC_005259.1 + 29054 0.74 0.108067
Target:  5'- aGAGCCGcgagcgcgguauCgGCCCGAUCugCGCUGCCa -3'
miRNA:   3'- -CUCGGCu-----------GgCGGGCUGGugGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 20746 0.74 0.111516
Target:  5'- uGGuCCGGCCauCCCGACCACCGucccccgcCCACCg -3'
miRNA:   3'- cUC-GGCUGGc-GGGCUGGUGGC--------GGUGG- -5'
23325 5' -63.2 NC_005259.1 + 53154 0.74 0.114468
Target:  5'- cAGCCGcuacGCCGaggCCGaucucGCCACCGCCGCCc -3'
miRNA:   3'- cUCGGC----UGGCg--GGC-----UGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 43658 0.74 0.117187
Target:  5'- -cGCCGACgGUgucguugCCGAUcaCACCGCCGCCg -3'
miRNA:   3'- cuCGGCUGgCG-------GGCUG--GUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 37155 0.74 0.117493
Target:  5'- uAGCCGucACCGCCgCGcCCGCCGaCGCCg -3'
miRNA:   3'- cUCGGC--UGGCGG-GCuGGUGGCgGUGG- -5'
23325 5' -63.2 NC_005259.1 + 22669 0.74 0.117493
Target:  5'- -cGCCGA-CGCaCUGACCGCCGCCgauuuccccGCCg -3'
miRNA:   3'- cuCGGCUgGCG-GGCUGGUGGCGG---------UGG- -5'
23325 5' -63.2 NC_005259.1 + 58694 0.74 0.117493
Target:  5'- gGGGUCGGCuCGUcgCCG-CCGCCGUCACCa -3'
miRNA:   3'- -CUCGGCUG-GCG--GGCuGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 46951 0.74 0.117493
Target:  5'- -cGCCGACCGCguugagcuugUUGGCCA-CGCCGCCg -3'
miRNA:   3'- cuCGGCUGGCG----------GGCUGGUgGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 23964 0.74 0.120593
Target:  5'- cGGGCCGAUUGaCCuCGuacCCGCgCGCCACCa -3'
miRNA:   3'- -CUCGGCUGGC-GG-GCu--GGUG-GCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 20109 0.74 0.123768
Target:  5'- uGAGCCGccgucucaagGCCGCaCUGGCUGCCGUCGCg -3'
miRNA:   3'- -CUCGGC----------UGGCG-GGCUGGUGGCGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.