miRNA display CGI


Results 121 - 140 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23325 5' -63.2 NC_005259.1 + 13564 0.71 0.18478
Target:  5'- -cGCCGAccCCGCCCcgacacccgaggacGACCccacguucgauuGCCGCUACCa -3'
miRNA:   3'- cuCGGCU--GGCGGG--------------CUGG------------UGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 38924 0.71 0.186171
Target:  5'- uGAGCaCGucgguguuGCUguGCCCGguGCCGCUGCCGCCg -3'
miRNA:   3'- -CUCG-GC--------UGG--CGGGC--UGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 40836 0.72 0.164151
Target:  5'- uGGGCCGcguguugauGCCcugcGCCuCGACCAUgGCCGCCc -3'
miRNA:   3'- -CUCGGC---------UGG----CGG-GCUGGUGgCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 46791 0.72 0.163736
Target:  5'- cGGGCCGAacaccgaGCCUGcgagcgcACCACCGgCCACCu -3'
miRNA:   3'- -CUCGGCUgg-----CGGGC-------UGGUGGC-GGUGG- -5'
23325 5' -63.2 NC_005259.1 + 46360 0.72 0.159632
Target:  5'- uGGGCCGcgauggcACCGCCCGGCC-CCaucucacgcaGCCGCg -3'
miRNA:   3'- -CUCGGC-------UGGCGGGCUGGuGG----------CGGUGg -5'
23325 5' -63.2 NC_005259.1 + 53154 0.74 0.114468
Target:  5'- cAGCCGcuacGCCGaggCCGaucucGCCACCGCCGCCc -3'
miRNA:   3'- cUCGGC----UGGCg--GGC-----UGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 43658 0.74 0.117187
Target:  5'- -cGCCGACgGUgucguugCCGAUcaCACCGCCGCCg -3'
miRNA:   3'- cuCGGCUGgCG-------GGCUG--GUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 37155 0.74 0.117493
Target:  5'- uAGCCGucACCGCCgCGcCCGCCGaCGCCg -3'
miRNA:   3'- cUCGGC--UGGCGG-GCuGGUGGCgGUGG- -5'
23325 5' -63.2 NC_005259.1 + 22669 0.74 0.117493
Target:  5'- -cGCCGA-CGCaCUGACCGCCGCCgauuuccccGCCg -3'
miRNA:   3'- cuCGGCUgGCG-GGCUGGUGGCGG---------UGG- -5'
23325 5' -63.2 NC_005259.1 + 58694 0.74 0.117493
Target:  5'- gGGGUCGGCuCGUcgCCG-CCGCCGUCACCa -3'
miRNA:   3'- -CUCGGCUG-GCG--GGCuGGUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 46951 0.74 0.117493
Target:  5'- -cGCCGACCGCguugagcuugUUGGCCA-CGCCGCCg -3'
miRNA:   3'- cuCGGCUGGCG----------GGCUGGUgGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 23964 0.74 0.120593
Target:  5'- cGGGCCGAUUGaCCuCGuacCCGCgCGCCACCa -3'
miRNA:   3'- -CUCGGCUGGC-GG-GCu--GGUG-GCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 20109 0.74 0.123768
Target:  5'- uGAGCCGccgucucaagGCCGCaCUGGCUGCCGUCGCg -3'
miRNA:   3'- -CUCGGC----------UGGCG-GGCUGGUGGCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 46556 0.74 0.12506
Target:  5'- -cGCCGACCGCgCCuauggucgcggcgucGACCG-CGCCGCCc -3'
miRNA:   3'- cuCGGCUGGCG-GG---------------CUGGUgGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 21027 0.73 0.130016
Target:  5'- cAGCUGACCGaugaCCGGCgcgcguucaagguCGCCGCCAUCg -3'
miRNA:   3'- cUCGGCUGGCg---GGCUG-------------GUGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 43275 0.73 0.130353
Target:  5'- aGAGuuGACCGCagCGcCCGCCGCCgacgcGCCc -3'
miRNA:   3'- -CUCggCUGGCGg-GCuGGUGGCGG-----UGG- -5'
23325 5' -63.2 NC_005259.1 + 51715 0.73 0.143761
Target:  5'- -uGUCGACCggacaagGCCCacaugauGGCCACCGCCACg -3'
miRNA:   3'- cuCGGCUGG-------CGGG-------CUGGUGGCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 13169 0.73 0.144501
Target:  5'- -cGCCcgaGACCGCCCGGCaGCuCGCCAUg -3'
miRNA:   3'- cuCGG---CUGGCGGGCUGgUG-GCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 14675 0.73 0.14674
Target:  5'- cGGGCCGcgugcacucgauuCUGCUCGACCcCCGCCGCg -3'
miRNA:   3'- -CUCGGCu------------GGCGGGCUGGuGGCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 21710 0.73 0.148251
Target:  5'- cGGGUcagaCGACCGCCCuGCCGCC-CCACa -3'
miRNA:   3'- -CUCG----GCUGGCGGGcUGGUGGcGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.