miRNA display CGI


Results 21 - 40 of 223 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23325 5' -63.2 NC_005259.1 + 44230 0.66 0.402443
Target:  5'- cGAGCU---CGCCCG-CCG-CGCCGCCc -3'
miRNA:   3'- -CUCGGcugGCGGGCuGGUgGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 57703 0.66 0.402443
Target:  5'- -uGCCGGgcUUGCCCGACUcgcgggucuGCCaGUCACCc -3'
miRNA:   3'- cuCGGCU--GGCGGGCUGG---------UGG-CGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 14903 0.66 0.402443
Target:  5'- aAGCCaagacccucACCGCaCUGGCCAuCCGCUAUCu -3'
miRNA:   3'- cUCGGc--------UGGCG-GGCUGGU-GGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 26729 0.66 0.391437
Target:  5'- cGGGCCGACCugcuggcagaccugGCUCacguaauccuGACCGaugaUGCCGCCg -3'
miRNA:   3'- -CUCGGCUGG--------------CGGG----------CUGGUg---GCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 58442 0.66 0.385592
Target:  5'- -cGCUGAUCggugGCCUugguGAUCGCgGCCACCa -3'
miRNA:   3'- cuCGGCUGG----CGGG----CUGGUGgCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 56724 0.66 0.385592
Target:  5'- --cCCGAgCGCgUCGACguauCCGCCACCg -3'
miRNA:   3'- cucGGCUgGCG-GGCUGgu--GGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 3866 0.66 0.385592
Target:  5'- cGGUCGAgCGCCuCGAgcCCACC-CCGCa -3'
miRNA:   3'- cUCGGCUgGCGG-GCU--GGUGGcGGUGg -5'
23325 5' -63.2 NC_005259.1 + 18700 0.66 0.385592
Target:  5'- uGAGCaCGGCgGUCUGACCucgaucaucggGCCGCCcgGCa -3'
miRNA:   3'- -CUCG-GCUGgCGGGCUGG-----------UGGCGG--UGg -5'
23325 5' -63.2 NC_005259.1 + 4416 0.66 0.385592
Target:  5'- aGGGCCGccACCGCgCGcCCGaggucgaGCCGCCc -3'
miRNA:   3'- -CUCGGC--UGGCGgGCuGGUgg-----CGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 43712 0.66 0.382279
Target:  5'- -cGCgCGACCGCaucgagucgauggCGGCCauGCCGCCgaGCCg -3'
miRNA:   3'- cuCG-GCUGGCGg------------GCUGG--UGGCGG--UGG- -5'
23325 5' -63.2 NC_005259.1 + 28363 0.66 0.377344
Target:  5'- -uGCUGGCUGCCCcACCucggGCCGaaACCg -3'
miRNA:   3'- cuCGGCUGGCGGGcUGG----UGGCggUGG- -5'
23325 5' -63.2 NC_005259.1 + 27267 0.66 0.377344
Target:  5'- aGGaCCGauacGCCGCCUugaGCCGCCGCUGCa -3'
miRNA:   3'- cUC-GGC----UGGCGGGc--UGGUGGCGGUGg -5'
23325 5' -63.2 NC_005259.1 + 33608 0.66 0.377344
Target:  5'- cGGUCGAgCUGCaaCCGGCCACCGaaACUg -3'
miRNA:   3'- cUCGGCU-GGCG--GGCUGGUGGCggUGG- -5'
23325 5' -63.2 NC_005259.1 + 58373 0.66 0.377344
Target:  5'- aAGUCGuagaGCUGCuCCGACggugcgCACCaGCCACCg -3'
miRNA:   3'- cUCGGC----UGGCG-GGCUG------GUGG-CGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 51970 0.66 0.377344
Target:  5'- aAGCCauGACCGCCaGAaucaUCACCGaCGCCg -3'
miRNA:   3'- cUCGG--CUGGCGGgCU----GGUGGCgGUGG- -5'
23325 5' -63.2 NC_005259.1 + 17775 0.66 0.377344
Target:  5'- cGGGCCGAgCGCaCCGagcguGCgCACCGCgAUa -3'
miRNA:   3'- -CUCGGCUgGCG-GGC-----UG-GUGGCGgUGg -5'
23325 5' -63.2 NC_005259.1 + 10657 0.66 0.376526
Target:  5'- cGGUCGAgCGCCUugaggauGGUCugCGCCGCCu -3'
miRNA:   3'- cUCGGCUgGCGGG-------CUGGugGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 10542 0.67 0.369215
Target:  5'- gGGGUCGAUCuucuggauguGCUCGAUCAaucgCGCCGCCu -3'
miRNA:   3'- -CUCGGCUGG----------CGGGCUGGUg---GCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 18409 0.67 0.369215
Target:  5'- -cGCCGA--GCCCG-CgC-CCGCCACCu -3'
miRNA:   3'- cuCGGCUggCGGGCuG-GuGGCGGUGG- -5'
23325 5' -63.2 NC_005259.1 + 22834 0.67 0.369215
Target:  5'- -cGUCGugCugGCCCGGCCcacCCGCaGCCg -3'
miRNA:   3'- cuCGGCugG--CGGGCUGGu--GGCGgUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.