miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23326 3' -64.4 NC_005259.1 + 12223 0.68 0.255066
Target:  5'- -cACCGCCCGC-UgGCCGGGcaaUGGUc -3'
miRNA:   3'- gaUGGCGGGCGuGgCGGCCCac-GCCG- -5'
23326 3' -64.4 NC_005259.1 + 40453 0.68 0.255066
Target:  5'- cCUGCCGgUgugguugaCGUACUGCCGGGccgcGCGGUu -3'
miRNA:   3'- -GAUGGCgG--------GCGUGGCGGCCCa---CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 25177 0.68 0.260561
Target:  5'- --uCCGaCCCGUacGCCGCCgccgaucccaccgGGGUcaGCGGCu -3'
miRNA:   3'- gauGGC-GGGCG--UGGCGG-------------CCCA--CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 6267 0.68 0.261178
Target:  5'- -cACCGCCgcCGCGCCuaccucgugGUCGaguGGUGCGGUa -3'
miRNA:   3'- gaUGGCGG--GCGUGG---------CGGC---CCACGCCG- -5'
23326 3' -64.4 NC_005259.1 + 45517 0.68 0.261178
Target:  5'- -cACCGCgCCGguguugGCCGCCGuGGcUGCGaGCg -3'
miRNA:   3'- gaUGGCG-GGCg-----UGGCGGC-CC-ACGC-CG- -5'
23326 3' -64.4 NC_005259.1 + 51661 0.68 0.261178
Target:  5'- uUGCCGCgCGgGCgCGUCGGGcacggGCGcGCg -3'
miRNA:   3'- gAUGGCGgGCgUG-GCGGCCCa----CGC-CG- -5'
23326 3' -64.4 NC_005259.1 + 8191 0.68 0.273759
Target:  5'- cCUGCCGUuuaCGCGCCcgauGUCGGGcaacagcgagcgUGCGGUg -3'
miRNA:   3'- -GAUGGCGg--GCGUGG----CGGCCC------------ACGCCG- -5'
23326 3' -64.4 NC_005259.1 + 23355 0.68 0.2744
Target:  5'- -gGCUGCCUGCgagGCCGCCGaGGcauggaucgucaacaGCGGUa -3'
miRNA:   3'- gaUGGCGGGCG---UGGCGGC-CCa--------------CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 23226 0.68 0.279576
Target:  5'- gUACCGUCCGCucgaCGCCaaugccaccucguGGGcgGUGGCc -3'
miRNA:   3'- gAUGGCGGGCGug--GCGG-------------CCCa-CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 39905 0.68 0.243195
Target:  5'- -cGCCGCCCGCcucgauCCGUCGaGG-GCcGCg -3'
miRNA:   3'- gaUGGCGGGCGu-----GGCGGC-CCaCGcCG- -5'
23326 3' -64.4 NC_005259.1 + 52473 0.69 0.237434
Target:  5'- -cACCGCCCGCGaauaCGUCGaG-GCGGUc -3'
miRNA:   3'- gaUGGCGGGCGUg---GCGGCcCaCGCCG- -5'
23326 3' -64.4 NC_005259.1 + 60365 0.69 0.215524
Target:  5'- cCUGCCcgaaauCCCGCcaAUCGCCGGacaGCGGCg -3'
miRNA:   3'- -GAUGGc-----GGGCG--UGGCGGCCca-CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 4599 0.69 0.226254
Target:  5'- -cACCGCCauagGCacGCUGUCGGGccgGUGGCg -3'
miRNA:   3'- gaUGGCGGg---CG--UGGCGGCCCa--CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 29938 0.69 0.226254
Target:  5'- -gGCCGCCa-CGCgGCCcGGUcGCGGCu -3'
miRNA:   3'- gaUGGCGGgcGUGgCGGcCCA-CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 35638 0.69 0.226254
Target:  5'- -gGCCGCCgcCGCuGCCGCUGGcGaggGUGGCc -3'
miRNA:   3'- gaUGGCGG--GCG-UGGCGGCC-Ca--CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 66642 0.69 0.231787
Target:  5'- -cACCGCUCGgauuGCUGCCGGucgGCGGUg -3'
miRNA:   3'- gaUGGCGGGCg---UGGCGGCCca-CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 37162 0.69 0.237434
Target:  5'- -cACCGCCgCGC-CCGCCGacgccgcgcgaGGacgagcUGCGGCc -3'
miRNA:   3'- gaUGGCGG-GCGuGGCGGC-----------CC------ACGCCG- -5'
23326 3' -64.4 NC_005259.1 + 45333 0.7 0.200249
Target:  5'- aCUGCgugGCCUGCGCCGCCuGGGccGCcGCg -3'
miRNA:   3'- -GAUGg--CGGGCGUGGCGG-CCCa-CGcCG- -5'
23326 3' -64.4 NC_005259.1 + 5707 0.7 0.185924
Target:  5'- gUGCCGCCaagGcCAgCGCCGGacgGCGGCc -3'
miRNA:   3'- gAUGGCGGg--C-GUgGCGGCCca-CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 12526 0.7 0.18317
Target:  5'- gCUACCcguagagccgagcgaGCCCcacgGCAUUGCCGGG-GUGGCc -3'
miRNA:   3'- -GAUGG---------------CGGG----CGUGGCGGCCCaCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.