miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23326 3' -64.4 NC_005259.1 + 66260 0.72 0.140884
Target:  5'- -cGCgGCCCGC---GCCGGGcgGCGGCu -3'
miRNA:   3'- gaUGgCGGGCGuggCGGCCCa-CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 14317 0.72 0.127142
Target:  5'- -gGCCGCCCucgaCGCCGCCGcccgcGUGCGGg -3'
miRNA:   3'- gaUGGCGGGc---GUGGCGGCc----CACGCCg -5'
23326 3' -64.4 NC_005259.1 + 37387 0.71 0.172511
Target:  5'- -cACCGCCCGCcgcGCCGCCcauGGUGuuGUu -3'
miRNA:   3'- gaUGGCGGGCG---UGGCGGc--CCACgcCG- -5'
23326 3' -64.4 NC_005259.1 + 26039 0.71 0.172511
Target:  5'- -gGCCaGCa-GCGCCGCCGGGU-UGGCc -3'
miRNA:   3'- gaUGG-CGggCGUGGCGGCCCAcGCCG- -5'
23326 3' -64.4 NC_005259.1 + 32911 0.71 0.168236
Target:  5'- -aGCCaCCCgGC-CCGCuCGGGcGCGGCg -3'
miRNA:   3'- gaUGGcGGG-CGuGGCG-GCCCaCGCCG- -5'
23326 3' -64.4 NC_005259.1 + 64441 0.71 0.164055
Target:  5'- -aGCUGCCgggGCGCUGCCcuuGGG-GCGGCg -3'
miRNA:   3'- gaUGGCGGg--CGUGGCGG---CCCaCGCCG- -5'
23326 3' -64.4 NC_005259.1 + 31255 0.71 0.164055
Target:  5'- gUGCCGCCC-CACaCGCCGcaguaGGcgGUGGCg -3'
miRNA:   3'- gAUGGCGGGcGUG-GCGGC-----CCa-CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 44653 0.71 0.152069
Target:  5'- -cGCCGCCCGacucgaacgccaCACCGuuGGGcagcGUGGCc -3'
miRNA:   3'- gaUGGCGGGC------------GUGGCggCCCa---CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 23902 0.7 0.19537
Target:  5'- -aGCCGCCgCGC-CCGCCGucgaaauacaacGGU-CGGCa -3'
miRNA:   3'- gaUGGCGG-GCGuGGCGGC------------CCAcGCCG- -5'
23326 3' -64.4 NC_005259.1 + 11445 0.7 0.19537
Target:  5'- -gGCCGCUCGCuGCCGCC-GGUGCc-- -3'
miRNA:   3'- gaUGGCGGGCG-UGGCGGcCCACGccg -5'
23326 3' -64.4 NC_005259.1 + 45751 0.7 0.19537
Target:  5'- -cACCGCCUcggggaugaGCACgcccuCGCCGGGUGCcaGCa -3'
miRNA:   3'- gaUGGCGGG---------CGUG-----GCGGCCCACGc-CG- -5'
23326 3' -64.4 NC_005259.1 + 35467 0.7 0.190596
Target:  5'- -cACCGCCaGCACCGCCcGGUa-GGCc -3'
miRNA:   3'- gaUGGCGGgCGUGGCGGcCCAcgCCG- -5'
23326 3' -64.4 NC_005259.1 + 28953 0.7 0.190596
Target:  5'- --cCUGCgCCGCAUCGCCGaGGU-CGGUg -3'
miRNA:   3'- gauGGCG-GGCGUGGCGGC-CCAcGCCG- -5'
23326 3' -64.4 NC_005259.1 + 46772 0.7 0.189184
Target:  5'- -cGCCGacagCCGCGcCCGCCGGGccgaacaccgagccUGCGaGCg -3'
miRNA:   3'- gaUGGCg---GGCGU-GGCGGCCC--------------ACGC-CG- -5'
23326 3' -64.4 NC_005259.1 + 37044 0.7 0.185924
Target:  5'- uUGgUGCCCGcCACCGCCcacgGCGGCg -3'
miRNA:   3'- gAUgGCGGGC-GUGGCGGcccaCGCCG- -5'
23326 3' -64.4 NC_005259.1 + 36878 0.7 0.185924
Target:  5'- -cACCGCCCGCGCCGacgaCGccGGUGa-GCg -3'
miRNA:   3'- gaUGGCGGGCGUGGCg---GC--CCACgcCG- -5'
23326 3' -64.4 NC_005259.1 + 25911 0.7 0.185924
Target:  5'- -gGCCGCCUGagcCGCCGCCGccGGUcCGGUg -3'
miRNA:   3'- gaUGGCGGGC---GUGGCGGC--CCAcGCCG- -5'
23326 3' -64.4 NC_005259.1 + 5707 0.7 0.185924
Target:  5'- gUGCCGCCaagGcCAgCGCCGGacgGCGGCc -3'
miRNA:   3'- gAUGGCGGg--C-GUgGCGGCCca-CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 12526 0.7 0.18317
Target:  5'- gCUACCcguagagccgagcgaGCCCcacgGCAUUGCCGGG-GUGGCc -3'
miRNA:   3'- -GAUGG---------------CGGG----CGUGGCGGCCCaCGCCG- -5'
23326 3' -64.4 NC_005259.1 + 45333 0.7 0.200249
Target:  5'- aCUGCgugGCCUGCGCCGCCuGGGccGCcGCg -3'
miRNA:   3'- -GAUGg--CGGGCGUGGCGG-CCCa-CGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.