miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23326 3' -64.4 NC_005259.1 + 32911 0.71 0.168236
Target:  5'- -aGCCaCCCgGC-CCGCuCGGGcGCGGCg -3'
miRNA:   3'- gaUGGcGGG-CGuGGCG-GCCCaCGCCG- -5'
23326 3' -64.4 NC_005259.1 + 33257 0.66 0.359452
Target:  5'- --uCUGCCCGCAgCGCCGa-UGCuGCg -3'
miRNA:   3'- gauGGCGGGCGUgGCGGCccACGcCG- -5'
23326 3' -64.4 NC_005259.1 + 35467 0.7 0.190596
Target:  5'- -cACCGCCaGCACCGCCcGGUa-GGCc -3'
miRNA:   3'- gaUGGCGGgCGUGGCGGcCCAcgCCG- -5'
23326 3' -64.4 NC_005259.1 + 35638 0.69 0.226254
Target:  5'- -gGCCGCCgcCGCuGCCGCUGGcGaggGUGGCc -3'
miRNA:   3'- gaUGGCGG--GCG-UGGCGGCC-Ca--CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 35842 0.66 0.359452
Target:  5'- -cACCGCCCGCgagcacagguccGCCGCCGcGUccaccGCaGCc -3'
miRNA:   3'- gaUGGCGGGCG------------UGGCGGCcCA-----CGcCG- -5'
23326 3' -64.4 NC_005259.1 + 36622 0.74 0.098046
Target:  5'- uUGCCGCCCGCGCCGCCcgcaa-GGCc -3'
miRNA:   3'- gAUGGCGGGCGUGGCGGcccacgCCG- -5'
23326 3' -64.4 NC_005259.1 + 36662 0.66 0.35164
Target:  5'- -cGCCGCCCucgccgcCGCCGCCGGG-GUc-- -3'
miRNA:   3'- gaUGGCGGGc------GUGGCGGCCCaCGccg -5'
23326 3' -64.4 NC_005259.1 + 36854 0.77 0.054683
Target:  5'- -cGCCGCCCGCugCGCCGu-UGCuGGCa -3'
miRNA:   3'- gaUGGCGGGCGugGCGGCccACG-CCG- -5'
23326 3' -64.4 NC_005259.1 + 36878 0.7 0.185924
Target:  5'- -cACCGCCCGCGCCGacgaCGccGGUGa-GCg -3'
miRNA:   3'- gaUGGCGGGCGUGGCg---GC--CCACgcCG- -5'
23326 3' -64.4 NC_005259.1 + 36970 0.66 0.336379
Target:  5'- -cGCCucgGCCCGCACCGCCGaacGUcGCa -3'
miRNA:   3'- gaUGG---CGGGCGUGGCGGCccaCGcCG- -5'
23326 3' -64.4 NC_005259.1 + 37044 0.7 0.185924
Target:  5'- uUGgUGCCCGcCACCGCCcacgGCGGCg -3'
miRNA:   3'- gAUgGCGGGC-GUGGCGGcccaCGCCG- -5'
23326 3' -64.4 NC_005259.1 + 37162 0.69 0.237434
Target:  5'- -cACCGCCgCGC-CCGCCGacgccgcgcgaGGacgagcUGCGGCc -3'
miRNA:   3'- gaUGGCGG-GCGuGGCGGC-----------CC------ACGCCG- -5'
23326 3' -64.4 NC_005259.1 + 37206 0.74 0.09551
Target:  5'- uUGCCGCcaCCGCcgccGCCGCCGGGgcGCuGGCc -3'
miRNA:   3'- gAUGGCG--GGCG----UGGCGGCCCa-CG-CCG- -5'
23326 3' -64.4 NC_005259.1 + 37276 0.66 0.34701
Target:  5'- -gGCCGCCCggcaggacuugcaugGCGgugcCCGCCGGGU-CaGCa -3'
miRNA:   3'- gaUGGCGGG---------------CGU----GGCGGCCCAcGcCG- -5'
23326 3' -64.4 NC_005259.1 + 37387 0.71 0.172511
Target:  5'- -cACCGCCCGCcgcGCCGCCcauGGUGuuGUu -3'
miRNA:   3'- gaUGGCGGGCG---UGGCGGc--CCACgcCG- -5'
23326 3' -64.4 NC_005259.1 + 37515 0.66 0.357096
Target:  5'- aUGCUGCCCGaCgagaagaucgucggGCCGCCGuuguugcGUGUGGUg -3'
miRNA:   3'- gAUGGCGGGC-G--------------UGGCGGCc------CACGCCG- -5'
23326 3' -64.4 NC_005259.1 + 37649 0.74 0.103312
Target:  5'- -gACCGCaCCGcCGCCGCCGccGGUGCcGCc -3'
miRNA:   3'- gaUGGCG-GGC-GUGGCGGC--CCACGcCG- -5'
23326 3' -64.4 NC_005259.1 + 39905 0.68 0.243195
Target:  5'- -cGCCGCCCGCcucgauCCGUCGaGG-GCcGCg -3'
miRNA:   3'- gaUGGCGGGCGu-----GGCGGC-CCaCGcCG- -5'
23326 3' -64.4 NC_005259.1 + 40453 0.68 0.255066
Target:  5'- cCUGCCGgUgugguugaCGUACUGCCGGGccgcGCGGUu -3'
miRNA:   3'- -GAUGGCgG--------GCGUGGCGGCCCa---CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 42480 0.67 0.299679
Target:  5'- -gGCCcgGCCCGUAgaGCCGugacccguccggcGGUGUGGCc -3'
miRNA:   3'- gaUGG--CGGGCGUggCGGC-------------CCACGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.