Results 61 - 80 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23326 | 3' | -64.4 | NC_005259.1 | + | 43252 | 0.73 | 0.11465 |
Target: 5'- aUGCCGCCCGC---GCCGGGUGCc-- -3' miRNA: 3'- gAUGGCGGGCGuggCGGCCCACGccg -5' |
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23326 | 3' | -64.4 | NC_005259.1 | + | 44653 | 0.71 | 0.152069 |
Target: 5'- -cGCCGCCCGacucgaacgccaCACCGuuGGGcagcGUGGCc -3' miRNA: 3'- gaUGGCGGGC------------GUGGCggCCCa---CGCCG- -5' |
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23326 | 3' | -64.4 | NC_005259.1 | + | 44920 | 0.67 | 0.321607 |
Target: 5'- -cGCCGCauaCGCGCUGaUCGGGUccaUGGCa -3' miRNA: 3'- gaUGGCGg--GCGUGGC-GGCCCAc--GCCG- -5' |
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23326 | 3' | -64.4 | NC_005259.1 | + | 44993 | 0.74 | 0.093035 |
Target: 5'- aCUGCCGaggcaCCGCcgACCGCCGGG-GCcGCg -3' miRNA: 3'- -GAUGGCg----GGCG--UGGCGGCCCaCGcCG- -5' |
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23326 | 3' | -64.4 | NC_005259.1 | + | 45162 | 0.66 | 0.336379 |
Target: 5'- -gGCCGCCCuuggccuuguuGCG-CGCCGaGGUcagcGCGGUg -3' miRNA: 3'- gaUGGCGGG-----------CGUgGCGGC-CCA----CGCCG- -5' |
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23326 | 3' | -64.4 | NC_005259.1 | + | 45333 | 0.7 | 0.200249 |
Target: 5'- aCUGCgugGCCUGCGCCGCCuGGGccGCcGCg -3' miRNA: 3'- -GAUGg--CGGGCGUGGCGG-CCCa-CGcCG- -5' |
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23326 | 3' | -64.4 | NC_005259.1 | + | 45517 | 0.68 | 0.261178 |
Target: 5'- -cACCGCgCCGguguugGCCGCCGuGGcUGCGaGCg -3' miRNA: 3'- gaUGGCG-GGCg-----UGGCGGC-CC-ACGC-CG- -5' |
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23326 | 3' | -64.4 | NC_005259.1 | + | 45751 | 0.7 | 0.19537 |
Target: 5'- -cACCGCCUcggggaugaGCACgcccuCGCCGGGUGCcaGCa -3' miRNA: 3'- gaUGGCGGG---------CGUG-----GCGGCCCACGc-CG- -5' |
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23326 | 3' | -64.4 | NC_005259.1 | + | 45836 | 0.79 | 0.04292 |
Target: 5'- aUGCCGUCCGCACCaCCGGGgccgGUGGg -3' miRNA: 3'- gAUGGCGGGCGUGGcGGCCCa---CGCCg -5' |
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23326 | 3' | -64.4 | NC_005259.1 | + | 46069 | 0.79 | 0.044094 |
Target: 5'- -aGCUGCUCaaGCACCGCCGGGgcgaGCGGUg -3' miRNA: 3'- gaUGGCGGG--CGUGGCGGCCCa---CGCCG- -5' |
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23326 | 3' | -64.4 | NC_005259.1 | + | 46166 | 0.75 | 0.081549 |
Target: 5'- aUACCGCuuGC-CCGCCGGGcGCGuCg -3' miRNA: 3'- gAUGGCGggCGuGGCGGCCCaCGCcG- -5' |
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23326 | 3' | -64.4 | NC_005259.1 | + | 46556 | 0.67 | 0.293533 |
Target: 5'- -cGCCGaCCGCGCCuaUGGucGCGGCg -3' miRNA: 3'- gaUGGCgGGCGUGGcgGCCcaCGCCG- -5' |
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23326 | 3' | -64.4 | NC_005259.1 | + | 46772 | 0.7 | 0.189184 |
Target: 5'- -cGCCGacagCCGCGcCCGCCGGGccgaacaccgagccUGCGaGCg -3' miRNA: 3'- gaUGGCg---GGCGU-GGCGGCCC--------------ACGC-CG- -5' |
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23326 | 3' | -64.4 | NC_005259.1 | + | 46889 | 0.67 | 0.293533 |
Target: 5'- -cGCCGCCCGCGaugagcgcCCGCCGagcaGUccGCGuGCg -3' miRNA: 3'- gaUGGCGGGCGU--------GGCGGCc---CA--CGC-CG- -5' |
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23326 | 3' | -64.4 | NC_005259.1 | + | 47973 | 0.72 | 0.144526 |
Target: 5'- -cGCCGCCCGCGaauaUGCCGGGcaGC-GCa -3' miRNA: 3'- gaUGGCGGGCGUg---GCGGCCCa-CGcCG- -5' |
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23326 | 3' | -64.4 | NC_005259.1 | + | 48171 | 0.81 | 0.030181 |
Target: 5'- -aACCGCCCccgcCGCCGCCGGGUGuCGGa -3' miRNA: 3'- gaUGGCGGGc---GUGGCGGCCCAC-GCCg -5' |
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23326 | 3' | -64.4 | NC_005259.1 | + | 50052 | 0.73 | 0.111711 |
Target: 5'- -cACCGcCCCGCACgCGaaaCGGGguguagaccUGCGGCa -3' miRNA: 3'- gaUGGC-GGGCGUG-GCg--GCCC---------ACGCCG- -5' |
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23326 | 3' | -64.4 | NC_005259.1 | + | 50698 | 0.73 | 0.11465 |
Target: 5'- gCUGCuCGUcgUCGCGCUugaGCCGGGUGCuGGCu -3' miRNA: 3'- -GAUG-GCG--GGCGUGG---CGGCCCACG-CCG- -5' |
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23326 | 3' | -64.4 | NC_005259.1 | + | 51113 | 0.68 | 0.241455 |
Target: 5'- --uCUGUCCGgcaggccaucagauCACCGUCGGG-GCGGCc -3' miRNA: 3'- gauGGCGGGC--------------GUGGCGGCCCaCGCCG- -5' |
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23326 | 3' | -64.4 | NC_005259.1 | + | 51661 | 0.68 | 0.261178 |
Target: 5'- uUGCCGCgCGgGCgCGUCGGGcacggGCGcGCg -3' miRNA: 3'- gAUGGCGgGCgUG-GCGGCCCa----CGC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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